gdsfmt 1.6.2 Xiuwen Zheng
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/gdsfmt | Last Changed Rev: 110052 / Revision: 116712 | Last Changed Date: 2015-10-28 16:27:56 -0700 (Wed, 28 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | | |
moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | [ OK ] | OK | OK | OK | |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/gdsfmt_1.6.2.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=gdsfmt.buildbin-libdir --merge-multiarch gdsfmt_1.6.2.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.6.2.zip && rm gdsfmt_1.6.2.tar.gz gdsfmt_1.6.2.zip
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install for i386
* installing *source* package 'gdsfmt' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_CoreArray.cpp -o R_CoreArray.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c gdsfmt.cpp -o gdsfmt.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dAny.cpp -o CoreArray/dAny.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dBase.cpp -o CoreArray/dBase.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dFile.cpp -o CoreArray/dFile.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dStream.cpp -o CoreArray/dStream.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/adler32.c -o ZLIB/adler32.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/compress.c -o ZLIB/compress.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/crc32.c -o ZLIB/crc32.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/deflate.c -o ZLIB/deflate.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/infback.c -o ZLIB/infback.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/inffast.c -o ZLIB/inffast.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/inflate.c -o ZLIB/inflate.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/inftrees.c -o ZLIB/inftrees.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/trees.c -o ZLIB/trees.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/uncompr.c -o ZLIB/uncompr.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ZLIB/zutil.c -o ZLIB/zutil.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c LZ4/lz4.c -o LZ4/lz4.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c LZ4/lz4hc.c -o LZ4/lz4hc.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c LZ4/lz4frame.c -o LZ4/lz4frame.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c LZ4/xxhash.c -o LZ4/xxhash.o
g++ -m32 -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'gdsfmt' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_CoreArray.cpp -o R_CoreArray.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c gdsfmt.cpp -o gdsfmt.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dAny.cpp -o CoreArray/dAny.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dBase.cpp -o CoreArray/dBase.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dFile.cpp -o CoreArray/dFile.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dStream.cpp -o CoreArray/dStream.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/adler32.c -o ZLIB/adler32.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/compress.c -o ZLIB/compress.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/crc32.c -o ZLIB/crc32.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/deflate.c -o ZLIB/deflate.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/infback.c -o ZLIB/infback.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/inffast.c -o ZLIB/inffast.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/inflate.c -o ZLIB/inflate.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/inftrees.c -o ZLIB/inftrees.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/trees.c -o ZLIB/trees.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/uncompr.c -o ZLIB/uncompr.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ZLIB/zutil.c -o ZLIB/zutil.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c LZ4/lz4.c -o LZ4/lz4.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c LZ4/lz4hc.c -o LZ4/lz4hc.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c LZ4/lz4frame.c -o LZ4/lz4frame.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DUSING_R -I../inst/include -ICoreArray -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c LZ4/xxhash.c -o LZ4/xxhash.o
g++ -m64 -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gdsfmt' as gdsfmt_1.6.2.zip
* DONE (gdsfmt)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'gdsfmt' successfully unpacked and MD5 sums checked