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BioC 3.2: BUILD BIN report for exomeCopy on perceval

This page was generated on 2015-11-10 14:47:18 -0800 (Tue, 10 Nov 2015).

Package 328/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
exomeCopy 1.16.0
Michael Love
Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/exomeCopy
Last Changed Rev: 109589 / Revision: 110496
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: exomeCopy
Version: 1.16.0
Command: rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh exomeCopy_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R exomeCopy.buildbin-libdir
StartedAt: 2015-11-10 11:14:32 -0800 (Tue, 10 Nov 2015)
EndedAt: 2015-11-10 11:14:45 -0800 (Tue, 10 Nov 2015)
EllapsedTime: 12.6 seconds
RetCode: 0
Status:  OK 
PackageFile: exomeCopy_1.16.0.tgz
PackageFileSize: 488.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh exomeCopy_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R exomeCopy.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=exomeCopy.buildbin-libdir exomeCopy_1.16.0.tar.gz'
>>>>>>> 

* installing *source* package ‘exomeCopy’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c exomeCopy.c -o exomeCopy.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o exomeCopy.so exomeCopy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/exomeCopy.buildbin-libdir/exomeCopy/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (exomeCopy)


>>>>>>> 
>>>>>>> FIXING LINKS FOR exomeCopy.buildbin-libdir/exomeCopy/libs//exomeCopy.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs//exomeCopy.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs//exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs//exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs//exomeCopy.so"