eiR 1.10.0
Thomas Girke
| Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/eiR | | Last Changed Rev: 109589 / Revision: 110496 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ WARNINGS ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | WARNINGS | OK | |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings eiR_1.10.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/eiR.Rcheck’
* using R version 3.2.2 Patched (2015-10-08 r69496)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘eiR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘eiR’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘eiR’ can be installed ... [34s/38s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
‘methods’ ‘ChemmineR’ ‘RCurl’ ‘snow’
A package should be listed in only one of these fields.
* checking top-level files ... NOTE
File
LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘BiocGenerics’ ‘RCurl’ ‘RUnit’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
insertEmbeddedDescriptors: no visible global function definition for
‘dbGetPreparedQuery’
insertEmbeddedDescriptors: no visible global function definition for
‘postgresqlWriteTable’
insertEmbeddedDescriptorsByCompoundId: no visible global function
definition for ‘dbGetPreparedQuery’
insertEmbeddedDescriptorsByCompoundId: no visible global function
definition for ‘postgresqlWriteTable’
insertGroupMembers: no visible global function definition for
‘dbGetPreparedQuery’
insertGroupMembers: no visible global function definition for
‘postgresqlWriteTable’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
src/Makevars
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section ‘Writing portable packages’ in
the ‘Writing R Extensions’ manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File ‘eiR/libs/eiR.so’:
Found ‘__ZSt4cerr’, possibly from ‘std::cerr’ (C++)
Objects: ‘apost.o’, ‘format.o’, ‘recordfile.o’, ‘scan.o’
Found ‘__ZSt4cout’, possibly from ‘std::cout’ (C++)
Objects: ‘apost.o’, ‘format.o’, ‘profiling.o’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... NOTE
The following directory looks like a leftover from 'knitr':
‘figure’
Please remove from your package.
* checking examples ... [39s/52s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
eiPerformanceTest 7.937 1.618 12.077
eiCluster 7.237 1.763 11.562
eiAdd 4.743 1.708 9.416
eiQuery 3.874 1.537 7.572
eiMakeDb 3.637 1.592 7.891
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’ [40s/63s]
[40s/64s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 7 NOTEs
See
‘/Users/biocbuild/bbs-3.2-bioc/meat/eiR.Rcheck/00check.log’
for details.
* installing *source* package ‘eiR’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c apost.cpp -o apost.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c char_bit_cnt.cpp -o char_bit_cnt.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c embedCoords.cc -o embedCoords.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c eucsearch.cc -o eucsearch.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c format.cc -o format.o
format.cc: In function ‘int binaryCoord(char*, char*, int)’:
format.cc:54: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c mplsh-model.cpp -o mplsh-model.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c mplsh.cpp -o mplsh.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c profiling.cc -o profiling.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c r_wrap.cpp -o r_wrap.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c recordfile.cc -o recordfile.o
recordfile.cc: In function ‘int read_file(const char*, int&, std::vector<double, std::allocator<double> >&, std::vector<int, std::allocator<int> >&, bool)’:
recordfile.cc:45: warning: comparison between signed and unsigned integer expressions
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -Wall -c routines.c -o routines.o
routines.c: In function ‘dcsrch_’:
routines.c:4466: warning: suggest parentheses around && within ||
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c scan.cc -o scan.o
scan.cc: In function ‘int eucsearch(const char*, const char*, int, std::ostream&)’:
scan.cc:54: warning: comparison between signed and unsigned integer expressions
scan.cc:56: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c search_r.cpp -o search_r.o
search_r.cpp: In function ‘int loadIndex(Index&, lshkit::FloatMatrix&, std::string&, float, unsigned int, unsigned int, unsigned int)’:
search_r.cpp:77: warning: comparison between signed and unsigned integer expressions
search_r.cpp: In function ‘SEXPREC* lshsearchAll(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
search_r.cpp:146: warning: unused variable ‘cnt’
search_r.cpp:142: warning: unused variable ‘k’
search_r.cpp: In function ‘SEXPREC* query(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
search_r.cpp:273: warning: unused variable ‘cnt’
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -DNO_MAIN -Iinclude -I. -fPIC -mtune=core2 -g -O2 -Wall -c solver.cc -o solver.o
solver.cc: In destructor ‘Solver::˜Solver()’:
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc: In member function ‘int Solver::optim(doublereal*, doublereal*, doublereal, doublereal)’:
solver.cc:91: warning: unused variable ‘buf’
cp signal1.h0 signal1.h
cp sysdep1.h0 sysdep1.h
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c f77vers.c
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c i77vers.c
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC main.c
main.c:57: warning: ‘sigfdie’ defined but not used
main.c:64: warning: ‘sigidie’ defined but not used
main.c:71: warning: ‘sigqdie’ defined but not used
main.c:79: warning: ‘sigindie’ defined but not used
main.c:85: warning: ‘sigtdie’ defined but not used
main.c:92: warning: ‘sigtrdie’ defined but not used
ld -r -x -o main.xxx main.o
mv main.xxx main.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC s_rnge.c
ld -r -x -o s_rnge.xxx s_rnge.o
mv s_rnge.xxx s_rnge.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC abort_.c
ld -r -x -o abort_.xxx abort_.o
mv abort_.xxx abort_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC exit_.c
ld -r -x -o exit_.xxx exit_.o
mv exit_.xxx exit_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC getarg_.c
ld -r -x -o getarg_.xxx getarg_.o
mv getarg_.xxx getarg_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC iargc_.c
ld -r -x -o iargc_.xxx iargc_.o
mv iargc_.xxx iargc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC getenv_.c
ld -r -x -o getenv_.xxx getenv_.o
mv getenv_.xxx getenv_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC signal_.c
ld -r -x -o signal_.xxx signal_.o
mv signal_.xxx signal_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC s_stop.c
ld -r -x -o s_stop.xxx s_stop.o
mv s_stop.xxx s_stop.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC s_paus.c
s_paus.c:30: warning: ‘waitpause’ defined but not used
s_paus.c:41: warning: ‘s_1paus’ defined but not used
ld -r -x -o s_paus.xxx s_paus.o
mv s_paus.xxx s_paus.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC system_.c
ld -r -x -o system_.xxx system_.o
mv system_.xxx system_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC cabs.c
ld -r -x -o cabs.xxx cabs.o
mv cabs.xxx cabs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC ctype.c
ld -r -x -o ctype.xxx ctype.o
mv ctype.xxx ctype.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC derf_.c
ld -r -x -o derf_.xxx derf_.o
mv derf_.xxx derf_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC derfc_.c
ld -r -x -o derfc_.xxx derfc_.o
mv derfc_.xxx derfc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC erf_.c
ld -r -x -o erf_.xxx erf_.o
mv erf_.xxx erf_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC erfc_.c
ld -r -x -o erfc_.xxx erfc_.o
mv erfc_.xxx erfc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC sig_die.c
ld -r -x -o sig_die.xxx sig_die.o
mv sig_die.xxx sig_die.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -o a.out -mtune=core2 -g -O2 -Wall -fPIC -DNO_FPINIT arithchk.c -lm ||\
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -o a.out -DNO_LONG_LONG -mtune=core2 -g -O2 -Wall -fPIC -DNO_FPINIT arithchk.c -lm
./a.out >arith.h
rm -f a.out arithchk.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC uninit.c
ld -r -x -o uninit.xxx uninit.o
mv uninit.xxx uninit.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_ci.c
ld -r -x -o pow_ci.xxx pow_ci.o
mv pow_ci.xxx pow_ci.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_dd.c
ld -r -x -o pow_dd.xxx pow_dd.o
mv pow_dd.xxx pow_dd.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_di.c
ld -r -x -o pow_di.xxx pow_di.o
mv pow_di.xxx pow_di.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_hh.c
ld -r -x -o pow_hh.xxx pow_hh.o
mv pow_hh.xxx pow_hh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_ii.c
ld -r -x -o pow_ii.xxx pow_ii.o
mv pow_ii.xxx pow_ii.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_ri.c
ld -r -x -o pow_ri.xxx pow_ri.o
mv pow_ri.xxx pow_ri.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_zi.c
ld -r -x -o pow_zi.xxx pow_zi.o
mv pow_zi.xxx pow_zi.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC pow_zz.c
ld -r -x -o pow_zz.xxx pow_zz.o
mv pow_zz.xxx pow_zz.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC c_abs.c
ld -r -x -o c_abs.xxx c_abs.o
mv c_abs.xxx c_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC c_cos.c
ld -r -x -o c_cos.xxx c_cos.o
mv c_cos.xxx c_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC c_div.c
ld -r -x -o c_div.xxx c_div.o
mv c_div.xxx c_div.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC c_exp.c
ld -r -x -o c_exp.xxx c_exp.o
mv c_exp.xxx c_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC c_log.c
ld -r -x -o c_log.xxx c_log.o
mv c_log.xxx c_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC c_sin.c
ld -r -x -o c_sin.xxx c_sin.o
mv c_sin.xxx c_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC c_sqrt.c
ld -r -x -o c_sqrt.xxx c_sqrt.o
mv c_sqrt.xxx c_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC z_abs.c
ld -r -x -o z_abs.xxx z_abs.o
mv z_abs.xxx z_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC z_cos.c
ld -r -x -o z_cos.xxx z_cos.o
mv z_cos.xxx z_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC z_div.c
ld -r -x -o z_div.xxx z_div.o
mv z_div.xxx z_div.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC z_exp.c
ld -r -x -o z_exp.xxx z_exp.o
mv z_exp.xxx z_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC z_log.c
ld -r -x -o z_log.xxx z_log.o
mv z_log.xxx z_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC z_sin.c
ld -r -x -o z_sin.xxx z_sin.o
mv z_sin.xxx z_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC z_sqrt.c
ld -r -x -o z_sqrt.xxx z_sqrt.o
mv z_sqrt.xxx z_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_abs.c
ld -r -x -o r_abs.xxx r_abs.o
mv r_abs.xxx r_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_acos.c
ld -r -x -o r_acos.xxx r_acos.o
mv r_acos.xxx r_acos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_asin.c
ld -r -x -o r_asin.xxx r_asin.o
mv r_asin.xxx r_asin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_atan.c
ld -r -x -o r_atan.xxx r_atan.o
mv r_atan.xxx r_atan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_atn2.c
ld -r -x -o r_atn2.xxx r_atn2.o
mv r_atn2.xxx r_atn2.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_cnjg.c
ld -r -x -o r_cnjg.xxx r_cnjg.o
mv r_cnjg.xxx r_cnjg.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_cos.c
ld -r -x -o r_cos.xxx r_cos.o
mv r_cos.xxx r_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_cosh.c
ld -r -x -o r_cosh.xxx r_cosh.o
mv r_cosh.xxx r_cosh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_dim.c
ld -r -x -o r_dim.xxx r_dim.o
mv r_dim.xxx r_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_exp.c
ld -r -x -o r_exp.xxx r_exp.o
mv r_exp.xxx r_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_imag.c
ld -r -x -o r_imag.xxx r_imag.o
mv r_imag.xxx r_imag.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_int.c
ld -r -x -o r_int.xxx r_int.o
mv r_int.xxx r_int.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_lg10.c
ld -r -x -o r_lg10.xxx r_lg10.o
mv r_lg10.xxx r_lg10.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_log.c
ld -r -x -o r_log.xxx r_log.o
mv r_log.xxx r_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_mod.c
ld -r -x -o r_mod.xxx r_mod.o
mv r_mod.xxx r_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_nint.c
ld -r -x -o r_nint.xxx r_nint.o
mv r_nint.xxx r_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_sign.c
ld -r -x -o r_sign.xxx r_sign.o
mv r_sign.xxx r_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_sin.c
ld -r -x -o r_sin.xxx r_sin.o
mv r_sin.xxx r_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_sinh.c
ld -r -x -o r_sinh.xxx r_sinh.o
mv r_sinh.xxx r_sinh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_sqrt.c
ld -r -x -o r_sqrt.xxx r_sqrt.o
mv r_sqrt.xxx r_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_tan.c
ld -r -x -o r_tan.xxx r_tan.o
mv r_tan.xxx r_tan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC r_tanh.c
ld -r -x -o r_tanh.xxx r_tanh.o
mv r_tanh.xxx r_tanh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_abs.c
ld -r -x -o d_abs.xxx d_abs.o
mv d_abs.xxx d_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_acos.c
ld -r -x -o d_acos.xxx d_acos.o
mv d_acos.xxx d_acos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_asin.c
ld -r -x -o d_asin.xxx d_asin.o
mv d_asin.xxx d_asin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_atan.c
ld -r -x -o d_atan.xxx d_atan.o
mv d_atan.xxx d_atan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_atn2.c
ld -r -x -o d_atn2.xxx d_atn2.o
mv d_atn2.xxx d_atn2.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_cnjg.c
ld -r -x -o d_cnjg.xxx d_cnjg.o
mv d_cnjg.xxx d_cnjg.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_cos.c
ld -r -x -o d_cos.xxx d_cos.o
mv d_cos.xxx d_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_cosh.c
ld -r -x -o d_cosh.xxx d_cosh.o
mv d_cosh.xxx d_cosh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_dim.c
ld -r -x -o d_dim.xxx d_dim.o
mv d_dim.xxx d_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_exp.c
ld -r -x -o d_exp.xxx d_exp.o
mv d_exp.xxx d_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_imag.c
ld -r -x -o d_imag.xxx d_imag.o
mv d_imag.xxx d_imag.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_int.c
ld -r -x -o d_int.xxx d_int.o
mv d_int.xxx d_int.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_lg10.c
ld -r -x -o d_lg10.xxx d_lg10.o
mv d_lg10.xxx d_lg10.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_log.c
ld -r -x -o d_log.xxx d_log.o
mv d_log.xxx d_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_mod.c
ld -r -x -o d_mod.xxx d_mod.o
mv d_mod.xxx d_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_nint.c
ld -r -x -o d_nint.xxx d_nint.o
mv d_nint.xxx d_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_prod.c
ld -r -x -o d_prod.xxx d_prod.o
mv d_prod.xxx d_prod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_sign.c
ld -r -x -o d_sign.xxx d_sign.o
mv d_sign.xxx d_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_sin.c
ld -r -x -o d_sin.xxx d_sin.o
mv d_sin.xxx d_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_sinh.c
ld -r -x -o d_sinh.xxx d_sinh.o
mv d_sinh.xxx d_sinh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_sqrt.c
ld -r -x -o d_sqrt.xxx d_sqrt.o
mv d_sqrt.xxx d_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_tan.c
ld -r -x -o d_tan.xxx d_tan.o
mv d_tan.xxx d_tan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC d_tanh.c
ld -r -x -o d_tanh.xxx d_tanh.o
mv d_tanh.xxx d_tanh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_abs.c
ld -r -x -o i_abs.xxx i_abs.o
mv i_abs.xxx i_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_dim.c
ld -r -x -o i_dim.xxx i_dim.o
mv i_dim.xxx i_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_dnnt.c
ld -r -x -o i_dnnt.xxx i_dnnt.o
mv i_dnnt.xxx i_dnnt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_indx.c
ld -r -x -o i_indx.xxx i_indx.o
mv i_indx.xxx i_indx.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_len.c
ld -r -x -o i_len.xxx i_len.o
mv i_len.xxx i_len.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_mod.c
ld -r -x -o i_mod.xxx i_mod.o
mv i_mod.xxx i_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_nint.c
ld -r -x -o i_nint.xxx i_nint.o
mv i_nint.xxx i_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC i_sign.c
ld -r -x -o i_sign.xxx i_sign.o
mv i_sign.xxx i_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC lbitbits.c
lbitbits.c: In function ‘lbit_cshift’:
lbitbits.c:47: warning: suggest parentheses around + or - inside shift
lbitbits.c:51: warning: suggest parentheses around + or - inside shift
lbitbits.c:60: warning: suggest parentheses around + or - inside shift
lbitbits.c:60: warning: suggest parentheses around arithmetic in operand of |
lbitbits.c:64: warning: suggest parentheses around + or - inside shift
lbitbits.c:64: warning: suggest parentheses around arithmetic in operand of |
ld -r -x -o lbitbits.xxx lbitbits.o
mv lbitbits.xxx lbitbits.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC lbitshft.c
ld -r -x -o lbitshft.xxx lbitshft.o
mv lbitshft.xxx lbitshft.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_abs.c
ld -r -x -o h_abs.xxx h_abs.o
mv h_abs.xxx h_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_dim.c
ld -r -x -o h_dim.xxx h_dim.o
mv h_dim.xxx h_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_dnnt.c
ld -r -x -o h_dnnt.xxx h_dnnt.o
mv h_dnnt.xxx h_dnnt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_indx.c
ld -r -x -o h_indx.xxx h_indx.o
mv h_indx.xxx h_indx.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_len.c
ld -r -x -o h_len.xxx h_len.o
mv h_len.xxx h_len.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_mod.c
ld -r -x -o h_mod.xxx h_mod.o
mv h_mod.xxx h_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_nint.c
ld -r -x -o h_nint.xxx h_nint.o
mv h_nint.xxx h_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC h_sign.c
ld -r -x -o h_sign.xxx h_sign.o
mv h_sign.xxx h_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC l_ge.c
ld -r -x -o l_ge.xxx l_ge.o
mv l_ge.xxx l_ge.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC l_gt.c
ld -r -x -o l_gt.xxx l_gt.o
mv l_gt.xxx l_gt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC l_le.c
ld -r -x -o l_le.xxx l_le.o
mv l_le.xxx l_le.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC l_lt.c
ld -r -x -o l_lt.xxx l_lt.o
mv l_lt.xxx l_lt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC hl_ge.c
ld -r -x -o hl_ge.xxx hl_ge.o
mv hl_ge.xxx hl_ge.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC hl_gt.c
ld -r -x -o hl_gt.xxx hl_gt.o
mv hl_gt.xxx hl_gt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC hl_le.c
ld -r -x -o hl_le.xxx hl_le.o
mv hl_le.xxx hl_le.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC hl_lt.c
ld -r -x -o hl_lt.xxx hl_lt.o
mv hl_lt.xxx hl_lt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC ef1asc_.c
ld -r -x -o ef1asc_.xxx ef1asc_.o
mv ef1asc_.xxx ef1asc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC ef1cmc_.c
ld -r -x -o ef1cmc_.xxx ef1cmc_.o
mv ef1cmc_.xxx ef1cmc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC f77_aloc.c
ld -r -x -o f77_aloc.xxx f77_aloc.o
mv f77_aloc.xxx f77_aloc.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC s_cat.c
ld -r -x -o s_cat.xxx s_cat.o
mv s_cat.xxx s_cat.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC s_cmp.c
ld -r -x -o s_cmp.xxx s_cmp.o
mv s_cmp.xxx s_cmp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC s_copy.c
ld -r -x -o s_copy.xxx s_copy.o
mv s_copy.xxx s_copy.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC backspac.c
ld -r -x -o backspac.xxx backspac.o
mv backspac.xxx backspac.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC close.c
ld -r -x -o close.xxx close.o
mv close.xxx close.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC dfe.c
dfe.c: In function ‘s_rdfe’:
dfe.c:104: warning: suggest parentheses around assignment used as truth value
dfe.c: In function ‘s_wdfe’:
dfe.c:126: warning: suggest parentheses around assignment used as truth value
ld -r -x -o dfe.xxx dfe.o
mv dfe.xxx dfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC dolio.c
ld -r -x -o dolio.xxx dolio.o
mv dolio.xxx dolio.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC due.c
due.c: In function ‘s_rdue’:
due.c:40: warning: suggest parentheses around assignment used as truth value
due.c: In function ‘s_wdue’:
due.c:53: warning: suggest parentheses around assignment used as truth value
ld -r -x -o due.xxx due.o
mv due.xxx due.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC endfile.c
endfile.c: In function ‘f_end’:
endfile.c:46: warning: suggest parentheses around assignment used as truth value
ld -r -x -o endfile.xxx endfile.o
mv endfile.xxx endfile.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC err.c
ld -r -x -o err.xxx err.o
mv err.xxx err.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC fmt.c
ld -r -x -o fmt.xxx fmt.o
mv fmt.xxx fmt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC fmtlib.c
ld -r -x -o fmtlib.xxx fmtlib.o
mv fmtlib.xxx fmtlib.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC ftell_.c
ld -r -x -o ftell_.xxx ftell_.o
mv ftell_.xxx ftell_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC iio.c
iio.c: In function ‘s_rsfi’:
iio.c:91: warning: suggest parentheses around assignment used as truth value
iio.c: In function ‘s_wsfi’:
iio.c:123: warning: suggest parentheses around assignment used as truth value
ld -r -x -o iio.xxx iio.o
mv iio.xxx iio.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC ilnw.c
ld -r -x -o ilnw.xxx ilnw.o
mv ilnw.xxx ilnw.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC inquire.c
inquire.c: In function ‘f_inqu’:
inquire.c:67: warning: suggest parentheses around && within ||
inquire.c:66: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:70: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:75: warning: suggest parentheses around && within ||
inquire.c:74: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:78: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:83: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:87: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:91: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:95: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:99: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:103: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:112: warning: suggest explicit braces to avoid ambiguous ‘else’
ld -r -x -o inquire.xxx inquire.o
mv inquire.xxx inquire.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC lread.c
lread.c: In function ‘l_C’:
lread.c:294: warning: suggest explicit braces to avoid ambiguous ‘else’
lread.c:317: warning: suggest parentheses around assignment used as truth value
lread.c:329: warning: suggest parentheses around assignment used as truth value
lread.c: In function ‘nmL_getc’:
lread.c:356: warning: suggest parentheses around assignment used as truth value
lread.c: In function ‘l_L’:
lread.c:438: warning: suggest explicit braces to avoid ambiguous ‘else’
lread.c: In function ‘l_read’:
lread.c:693: warning: suggest parentheses around assignment used as truth value
lread.c:698: warning: suggest parentheses around assignment used as truth value
lread.c:709: warning: suggest parentheses around assignment used as truth value
lread.c:714: warning: suggest parentheses around assignment used as truth value
lread.c:717: warning: suggest parentheses around assignment used as truth value
lread.c: In function ‘s_rsle’:
lread.c:790: warning: suggest parentheses around assignment used as truth value
ld -r -x -o lread.xxx lread.o
mv lread.xxx lread.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC lwrite.c
lwrite.c: In function ‘l_g’:
lwrite.c:141: warning: suggest parentheses around assignment used as truth value
lwrite.c:166: warning: suggest parentheses around assignment used as truth value
lwrite.c: In function ‘l_put’:
lwrite.c:190: warning: suggest parentheses around assignment used as truth value
ld -r -x -o lwrite.xxx lwrite.o
mv lwrite.xxx lwrite.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC open.c
open.c: In function ‘f_open’:
open.c:246: warning: suggest parentheses around assignment used as truth value
open.c:256: warning: suggest parentheses around assignment used as truth value
open.c:258: warning: suggest parentheses around assignment used as truth value
open.c:270: warning: suggest explicit braces to avoid ambiguous ‘else’
ld -r -x -o open.xxx open.o
mv open.xxx open.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC rdfmt.c
rdfmt.c: In function ‘rd_Z’:
rdfmt.c:39: warning: suggest parentheses around assignment used as truth value
rdfmt.c:42: warning: suggest parentheses around assignment used as truth value
rdfmt.c:71: warning: suggest parentheses around + or - inside shift
rdfmt.c:93: warning: suggest parentheses around + or - inside shift
rdfmt.c:93: warning: suggest parentheses around arithmetic in operand of |
ld -r -x -o rdfmt.xxx rdfmt.o
mv rdfmt.xxx rdfmt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC rewind.c
ld -r -x -o rewind.xxx rewind.o
mv rewind.xxx rewind.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC rsfe.c
rsfe.c: In function ‘s_rsfe’:
rsfe.c:67: warning: suggest parentheses around assignment used as truth value
ld -r -x -o rsfe.xxx rsfe.o
mv rsfe.xxx rsfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC rsli.c
ld -r -x -o rsli.xxx rsli.o
mv rsli.xxx rsli.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC rsne.c
rsne.c: In function ‘hash’:
rsne.c:86: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘mk_hashtab’:
rsne.c:107: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘nl_init’:
rsne.c:159: warning: suggest parentheses around assignment used as truth value
rsne.c:165: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘getname’:
rsne.c:188: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘getdimen’:
rsne.c:243: warning: suggest parentheses around assignment used as truth value
rsne.c:247: warning: suggest parentheses around assignment used as truth value
rsne.c:251: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘x_rsne’:
rsne.c:349: warning: suggest parentheses around assignment used as truth value
rsne.c:401: warning: suggest parentheses around && within ||
rsne.c:404: warning: suggest parentheses around assignment used as truth value
rsne.c:429: warning: suggest parentheses around assignment used as truth value
rsne.c:445: warning: suggest parentheses around assignment used as truth value
rsne.c:457: warning: suggest parentheses around assignment used as truth value
rsne.c:476: warning: suggest parentheses around assignment used as truth value
rsne.c:511: warning: suggest parentheses around assignment used as truth value
rsne.c:531: warning: suggest parentheses around assignment used as truth value
rsne.c:542: warning: suggest parentheses around assignment used as truth value
rsne.c:549: warning: suggest explicit braces to avoid ambiguous ‘else’
rsne.c: In function ‘s_rsne’:
rsne.c:603: warning: suggest parentheses around assignment used as truth value
ld -r -x -o rsne.xxx rsne.o
mv rsne.xxx rsne.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC sfe.c
ld -r -x -o sfe.xxx sfe.o
mv sfe.xxx sfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC sue.c
sue.c: In function ‘s_rsue’:
sue.c:38: warning: suggest parentheses around assignment used as truth value
sue.c: In function ‘s_wsue’:
sue.c:61: warning: suggest parentheses around assignment used as truth value
ld -r -x -o sue.xxx sue.o
mv sue.xxx sue.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC typesize.c
ld -r -x -o typesize.xxx typesize.o
mv typesize.xxx typesize.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC uio.c
ld -r -x -o uio.xxx uio.o
mv uio.xxx uio.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC util.c
ld -r -x -o util.xxx util.o
mv util.xxx util.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC wref.c
wref.c: In function ‘wrt_E’:
wref.c:140: warning: suggest parentheses around assignment used as truth value
wref.c: In function ‘wrt_F’:
wref.c:236: warning: suggest parentheses around assignment used as truth value
wref.c:236: warning: suggest explicit braces to avoid ambiguous ‘else’
wref.c:286: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wref.xxx wref.o
mv wref.xxx wref.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC wrtfmt.c
ld -r -x -o wrtfmt.xxx wrtfmt.o
mv wrtfmt.xxx wrtfmt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC wsfe.c
wsfe.c: In function ‘s_wsfe’:
wsfe.c:55: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wsfe.xxx wsfe.o
mv wsfe.xxx wsfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC wsle.c
wsle.c: In function ‘s_wsle’:
wsle.c:17: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wsle.xxx wsle.o
mv wsle.xxx wsle.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC wsne.c
wsne.c: In function ‘s_wsne’:
wsne.c:17: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wsne.xxx wsne.o
mv wsne.xxx wsne.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC xwsne.c
ld -r -x -o xwsne.xxx xwsne.o
mv xwsne.xxx xwsne.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC dtime_.c
ld -r -x -o dtime_.xxx dtime_.o
mv dtime_.xxx dtime_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall -fPIC etime_.c
ld -r -x -o etime_.xxx etime_.o
mv etime_.xxx etime_.o
ar r libf2c.a f77vers.o i77vers.o main.o s_rnge.o abort_.o exit_.o getarg_.o iargc_.o getenv_.o signal_.o s_stop.o s_paus.o system_.o cabs.o ctype.o derf_.o derfc_.o erf_.o erfc_.o sig_die.o uninit.o pow_ci.o pow_dd.o pow_di.o pow_hh.o pow_ii.o pow_ri.o pow_zi.o pow_zz.o c_abs.o c_cos.o c_div.o c_exp.o c_log.o c_sin.o c_sqrt.o z_abs.o z_cos.o z_div.o z_exp.o z_log.o z_sin.o z_sqrt.o r_abs.o r_acos.o r_asin.o r_atan.o r_atn2.o r_cnjg.o r_cos.o r_cosh.o r_dim.o r_exp.o r_imag.o r_int.o r_lg10.o r_log.o r_mod.o r_nint.o r_sign.o r_sin.o r_sinh.o r_sqrt.o r_tan.o r_tanh.o d_abs.o d_acos.o d_asin.o d_atan.o d_atn2.o d_cnjg.o d_cos.o d_cosh.o d_dim.o d_exp.o d_imag.o d_int.o d_lg10.o d_log.o d_mod.o d_nint.o d_prod.o d_sign.o d_sin.o d_sinh.o d_sqrt.o d_tan.o d_tanh.o i_abs.o i_dim.o i_dnnt.o i_indx.o i_len.o i_mod.o i_nint.o i_sign.o lbitbits.o lbitshft.o h_abs.o h_dim.o h_dnnt.o h_indx.o h_len.o h_mod.o h_nint.o h_sign.o l_ge.o l_gt.o l_le.o l_lt.o hl_ge.o hl_gt.o hl_le.o hl_lt.o ef1asc_.o ef1cmc_.o f77_aloc.o s_cat.o s_cmp.o s_copy.o backspac.o close.o dfe.o dolio.o due.o endfile.o err.o fmt.o fmtlib.o ftell_.o iio.o ilnw.o inquire.o lread.o lwrite.o open.o rdfmt.o rewind.o rsfe.o rsli.o rsne.o sfe.o sue.o typesize.o uio.o util.o wref.o wrtfmt.o wsfe.o wsle.o wsne.o xwsne.o dtime_.o etime_.o
ar: creating archive libf2c.a
/usr/bin/ranlib: file: libf2c.a(s_paus.o) has no symbols
ranlib libf2c.a
ranlib: file: libf2c.a(s_paus.o) has no symbols
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o eiR.so apost.o char_bit_cnt.o embedCoords.o eucsearch.o format.o mplsh-model.o mplsh.o profiling.o r_wrap.o recordfile.o routines.o scan.o search_r.o solver.o -lm -Lf2c -lf2c -L. -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/eiR.Rcheck/eiR/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (eiR)