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BioC 3.2: BUILD report for destiny on perceval

This page was generated on 2015-11-10 14:50:03 -0800 (Tue, 10 Nov 2015).

Package 270/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
destiny 1.0.0
Philipp Angerer
Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/destiny
Last Changed Rev: 109589 / Revision: 110496
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: destiny
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
StartedAt: 2015-11-09 21:50:01 -0800 (Mon, 09 Nov 2015)
EndedAt: 2015-11-09 21:50:03 -0800 (Mon, 09 Nov 2015)
EllapsedTime: 2.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
###
##############################################################################
##############################################################################


* checking for file ‘destiny/DESCRIPTION’ ... OK
* preparing ‘destiny’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘destiny’ ...
** libs
I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppEigen/include"  -g    -c RcppExports.cpp -o RcppExports.o
/bin/sh: I/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [RcppExports.o] Error 127 (ignored)
I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppEigen/include"  -g    -c censoring.cpp -o censoring.o
/bin/sh: I/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [censoring.o] Error 127 (ignored)
I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppEigen/include"  -g    -c no_censoring.cpp -o no_censoring.o
/bin/sh: I/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [no_censoring.o] Error 127 (ignored)
-dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o destiny.so RcppExports.o censoring.o no_censoring.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
/bin/sh: -dynamiclib: command not found
make: *** [destiny.so] Error 127
ERROR: compilation failed for package ‘destiny’
* removing ‘/private/tmp/Rtmp3fuDbY/Rinstaefe5360a3c1/destiny’
      -----------------------------------
ERROR: package installation failed