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BioC 3.2: BUILD BIN report for csaw on perceval

This page was generated on 2015-11-10 14:49:15 -0800 (Tue, 10 Nov 2015).

Package 239/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
csaw 1.4.0
Aaron Lun
Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/csaw
Last Changed Rev: 109614 / Revision: 110496
Last Changed Date: 2015-10-14 09:14:32 -0700 (Wed, 14 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: csaw
Version: 1.4.0
Command: rm -rf csaw.buildbin-libdir && mkdir csaw.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh csaw_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R csaw.buildbin-libdir
StartedAt: 2015-11-10 11:10:39 -0800 (Tue, 10 Nov 2015)
EndedAt: 2015-11-10 11:11:09 -0800 (Tue, 10 Nov 2015)
EllapsedTime: 30.2 seconds
RetCode: 0
Status:  OK 
PackageFile: csaw_1.4.0.tgz
PackageFileSize: 1.559 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf csaw.buildbin-libdir && mkdir csaw.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh csaw_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R csaw.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=csaw.buildbin-libdir csaw_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘csaw’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c annotator.cpp -o annotator.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c best_in_cluster.cpp -o best_in_cluster.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c check_bimodality.cpp -o check_bimodality.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c correlate_reads.cpp -o correlate_reads.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c find_maxima.cpp -o find_maxima.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c get_cluster_stats.cpp -o get_cluster_stats.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c get_profile.cpp -o get_profile.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c get_rle_counts.cpp -o get_rle_counts.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c init.cpp -o init.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c merge_windows.cpp -o merge_windows.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o csaw.so annotator.o best_in_cluster.o check_bimodality.o correlate_reads.o find_maxima.o get_cluster_stats.o get_profile.o get_rle_counts.o init.o merge_windows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/csaw.buildbin-libdir/csaw/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (csaw)


>>>>>>> 
>>>>>>> FIXING LINKS FOR csaw.buildbin-libdir/csaw/libs//csaw.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"