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BioC 3.2: INSTALL report for crlmm on oaxaca

This page was generated on 2016-04-23 10:24:21 -0700 (Sat, 23 Apr 2016).

Package 237/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
crlmm 1.28.2
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/crlmm
Last Changed Rev: 112479 / Revision: 116712
Last Changed Date: 2016-01-12 12:53:13 -0800 (Tue, 12 Jan 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: crlmm
Version: 1.28.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL crlmm
StartedAt: 2016-04-22 17:20:56 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:21:24 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 27.7 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL crlmm
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’
* installing *source* package ‘crlmm’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/preprocessCore/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c gtypeCaller.c -o gtypeCaller.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/preprocessCore/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/preprocessCore/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c trimmed.c -o trimmed.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/preprocessCore/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o crlmm.so gtypeCaller.o init.o trimmed.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/crlmm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘AffyGW.Rnw’ 
   ‘CopyNumberOverview.Rnw’ 
   ‘IlluminaPreprocessCN.Rnw’ 
   ‘Infrastructure.Rnw’ 
   ‘genotyping.Rnw’ 
   ‘gtypeDownstream.Rnw’ 
** testing if installed package can be loaded
* DONE (crlmm)