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BioC 3.2: BUILD BIN report for chimera on perceval

This page was generated on 2015-11-10 14:47:59 -0800 (Tue, 10 Nov 2015).

Package 162/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chimera 1.12.0
Raffaele A Calogero
Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/chimera
Last Changed Rev: 109589 / Revision: 110496
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: chimera
Version: 1.12.0
Command: rm -rf chimera.buildbin-libdir && mkdir chimera.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chimera_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chimera.buildbin-libdir
StartedAt: 2015-11-10 11:06:35 -0800 (Tue, 10 Nov 2015)
EndedAt: 2015-11-10 11:07:05 -0800 (Tue, 10 Nov 2015)
EllapsedTime: 30.2 seconds
RetCode: 0
Status:  OK 
PackageFile: chimera_1.12.0.tgz
PackageFileSize: 2.308 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf chimera.buildbin-libdir && mkdir chimera.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chimera_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chimera.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=chimera.buildbin-libdir chimera_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package ‘chimera’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c StarParser.cpp -o StarParser.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o chimera.so StarParser.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/chimera.buildbin-libdir/chimera/libs
** R
** inst
** preparing package for lazy loading
Now getting the GODb Object directly
Now getting the OrgDb Object directly
Now getting the TxDb Object directly
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Now getting the GODb Object directly
Now getting the OrgDb Object directly
Now getting the TxDb Object directly
* DONE (chimera)


>>>>>>> 
>>>>>>> FIXING LINKS FOR chimera.buildbin-libdir/chimera/libs//chimera.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "chimera.buildbin-libdir/chimera/libs//chimera.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "chimera.buildbin-libdir/chimera/libs//chimera.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "chimera.buildbin-libdir/chimera/libs//chimera.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "chimera.buildbin-libdir/chimera/libs//chimera.so"