BioC 3.2: CHECK report for a4Preproc on windows1.bioconductor.org

Package: a4Preproc

Version: 1.18.0

Command: rm -rf a4Preproc.buildbin-libdir a4Preproc.Rcheck && mkdir a4Preproc.buildbin-libdir a4Preproc.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=a4Preproc.buildbin-libdir a4Preproc_1.18.0.tar.gz >a4Preproc.Rcheck\00install.out 2>&1 && cp a4Preproc.Rcheck\00install.out a4Preproc-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=a4Preproc.buildbin-libdir --install="check:a4Preproc-install.out" --force-multiarch --no-vignettes --timings a4Preproc_1.18.0.tar.gz

StartedAt: 2015-10-26 23:33:09 -0400 (Mon, 26 Oct 2015)

EndedAt: 2015-10-26 23:34:30 -0400 (Mon, 26 Oct 2015)

EllapsedTime: 81.7 seconds

RetCode: 0

Status:  OK

CheckDir: a4Preproc.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf a4Preproc.buildbin-libdir a4Preproc.Rcheck && mkdir a4Preproc.buildbin-libdir a4Preproc.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=a4Preproc.buildbin-libdir a4Preproc_1.18.0.tar.gz >a4Preproc.Rcheck\00install.out 2>&1 && cp a4Preproc.Rcheck\00install.out a4Preproc-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=a4Preproc.buildbin-libdir --install="check:a4Preproc-install.out" --force-multiarch --no-vignettes --timings a4Preproc_1.18.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/a4Preproc.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'a4Preproc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4Preproc' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'a4Preproc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addGeneInfo: no visible global function definition for 'annotation'
addGeneInfo: no visible global function definition for 'featureNames'
addGeneInfo: no visible global function definition for 'featureData'
addGeneInfo: no visible global function definition for 'pData'
addGeneInfo: no visible global function definition for 'pData<-'
addGeneInfo: no visible global function definition for 'featureData<-'
addGeneInfo: no visible global function definition for 'fvarMetadata'
addGeneInfo: no visible global function definition for 'fvarMetadata<-'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/a4Preproc.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'a4Preproc' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'a4Preproc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Preproc' as a4Preproc_1.18.0.zip
* DONE (a4Preproc)

name	user	system	elapsed
addGeneInfo	2.32	0.05	2.89

name	user	system	elapsed
addGeneInfo	2.51	0.06	2.58