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BioC 3.2: INSTALL report for RpsiXML on moscato1

This page was generated on 2016-04-23 10:16:43 -0700 (Sat, 23 Apr 2016).

Package 910/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RpsiXML 2.12.0
Jitao David Zhang
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/RpsiXML
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RpsiXML
Version: 2.12.0
Command: rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/RpsiXML_2.12.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=RpsiXML.buildbin-libdir --merge-multiarch RpsiXML_2.12.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.12.0.zip && rm RpsiXML_2.12.0.tar.gz RpsiXML_2.12.0.zip
StartedAt: 2016-04-22 18:09:08 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 18:10:35 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 87.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/RpsiXML_2.12.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=RpsiXML.buildbin-libdir --merge-multiarch RpsiXML_2.12.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.12.0.zip  && rm RpsiXML_2.12.0.tar.gz RpsiXML_2.12.0.zip
###
##############################################################################
##############################################################################


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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 2054k    0  4136    0     0   273k      0  0:00:07 --:--:--  0:00:07  367k
100 2054k  100 2054k    0     0  61.1M      0 --:--:-- --:--:-- --:--:-- 69.1M

install for i386

* installing *source* package 'RpsiXML' ...
** R
** inst
** preparing package for lazy loading
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
Note: in method for 'head' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
Note: in method for 'tail' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst

install for x64

* installing *source* package 'RpsiXML' ...
** testing if installed package can be loaded
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
* MD5 sums
packaged installation of 'RpsiXML' as RpsiXML_2.12.0.zip
* DONE (RpsiXML)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'RpsiXML' successfully unpacked and MD5 sums checked