RDAVIDWebService 1.8.0
Cristobal Fresno
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/RDAVIDWebService | | Last Changed Rev: 109589 / Revision: 116712 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | WARNINGS | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | [ OK ] | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RDAVIDWebService_1.8.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/RDAVIDWebService.Rcheck’
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RDAVIDWebService/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RDAVIDWebService’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RDAVIDWebService’ can be installed ... [20s/22s] OK
* checking installed package size ... NOTE
installed size is 23.7Mb
sub-directories of 1Mb or more:
java 21.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
benjaminis,DAVIDGODag: no visible global function definition for
‘nodeData’
benjaminis,DAVIDGODag: no visible global function definition for
‘goDag’
bonferronis,DAVIDGODag: no visible global function definition for
‘nodeData’
bonferronis,DAVIDGODag: no visible global function definition for
‘goDag’
counts,DAVIDGODag: no visible global function definition for ‘nodeData’
counts,DAVIDGODag: no visible global function definition for ‘goDag’
fdrs,DAVIDGODag: no visible global function definition for ‘nodeData’
fdrs,DAVIDGODag: no visible global function definition for ‘goDag’
foldEnrichments,DAVIDGODag: no visible global function definition for
‘nodeData’
foldEnrichments,DAVIDGODag: no visible global function definition for
‘goDag’
initialize,DAVIDGODag : .local: no visible global function definition
for ‘nodeDataDefaults<-’
initialize,DAVIDGODag : .local: no visible global function definition
for ‘GOGraph’
initialize,DAVIDGODag : .local: no visible global function definition
for ‘inEdges’
initialize,DAVIDGODag : .local: no visible global function definition
for ‘removeNode’
initialize,DAVIDGODag : .local: no visible global function definition
for ‘nodes’
initialize,DAVIDGODag : .local : <anonymous>: no visible global
function definition for ‘nodeData<-’
initialize,DAVIDGODag : .local : <anonymous>: no visible global
function definition for ‘Term’
initialize,DAVIDGODag : .local: no visible global function definition
for ‘nodeData<-’
initialize,DAVIDGODag : .local: no visible global function definition
for ‘nodeData’
listTotals,DAVIDGODag: no visible global function definition for
‘nodeData’
listTotals,DAVIDGODag: no visible global function definition for
‘goDag’
percentages,DAVIDGODag: no visible global function definition for
‘nodeData’
percentages,DAVIDGODag: no visible global function definition for
‘goDag’
plot2D,DAVIDResult : .local: no visible binding for global variable ‘y’
plot2D,DAVIDResult : .local: no visible binding for global variable ‘x’
plot2D,DAVIDResult : .local: no visible binding for global variable
‘fill’
popHits,DAVIDGODag: no visible global function definition for
‘nodeData’
popHits,DAVIDGODag: no visible global function definition for ‘goDag’
popTotals,DAVIDGODag: no visible global function definition for
‘nodeData’
popTotals,DAVIDGODag: no visible global function definition for ‘goDag’
terms,DAVIDGODag: no visible global function definition for ‘nodeData’
terms,DAVIDGODag: no visible global function definition for ‘goDag’
upsideDown,graph: no visible global function definition for ‘nodes’
upsideDown,graph: no visible global function definition for ‘edges’
upsideDown,graph : <anonymous>: no visible global function definition
for ‘edges’
upsideDown,graph : <anonymous> : <anonymous>: no visible global
function definition for ‘addEdge’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [25s/26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/Users/biocbuild/bbs-3.2-bioc/meat/RDAVIDWebService.Rcheck/00check.log’
for details.