BioC 3.2: CHECK report for Prize on oaxaca

Package: Prize

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.0.0.tar.gz

StartedAt: 2016-04-23 03:11:35 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 03:13:35 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 120.3 seconds

RetCode: 0

Status:  OK

CheckDir: Prize.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/Prize.Rcheck’
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Prize/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Prize’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Prize’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [72s/76s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
gaggregate          7.032  0.019   7.066
Prize-package       6.083  0.041   9.580
ICR                 5.918  0.015   5.942
saaty_inconsistency 5.233  0.038   5.273
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [13s/13s]
 [13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘Prize’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Prize)

name	user	system	elapsed
AIJ	3.444	0.013	3.460
AIP	2.056	0.004	2.062
CI	3.592	0.013	3.617
GCR	3.357	0.006	3.367
ICR	5.918	0.015	5.942
IP	4.064	0.009	4.075
Prize-package	6.083	0.041	9.580
RM	0.593	0.003	0.596
ahmatrix	0.001	0.000	0.002
ahp	0.540	0.001	0.541
ahp_matrix	0.002	0.001	0.003
ahp_plot	3.918	0.043	3.965
ahp_weights	4.322	0.039	4.364
ahplot	0.022	0.001	0.024
crplot	0.242	0.001	0.244
dplot	0.16	0.00	0.16
gaggregate	7.032	0.019	7.066
pipeline	4.325	0.034	4.361
rainbow_plot	4.179	0.036	4.215
rainbowplot	0.247	0.001	0.248
rating	1.107	0.002	1.113
saaty_inconsistency	5.233	0.038	5.273
simulation	4.259	0.037	4.323
weight	1.242	0.002	1.264
weight_plot	4.411	0.036	4.449
wplot	0.413	0.002	0.461