BioC 3.2: CHECK report for OperaMate on windows1.bioconductor.org

Package: OperaMate

Version: 1.2.0

Command: rm -rf OperaMate.buildbin-libdir OperaMate.Rcheck && mkdir OperaMate.buildbin-libdir OperaMate.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OperaMate.buildbin-libdir OperaMate_1.2.0.tar.gz >OperaMate.Rcheck\00install.out 2>&1 && cp OperaMate.Rcheck\00install.out OperaMate-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=OperaMate.buildbin-libdir --install="check:OperaMate-install.out" --force-multiarch --no-vignettes --timings OperaMate_1.2.0.tar.gz

StartedAt: 2015-10-27 04:12:12 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 04:15:50 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 217.8 seconds

RetCode: 0

Status:  OK

CheckDir: OperaMate.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf OperaMate.buildbin-libdir OperaMate.Rcheck && mkdir OperaMate.buildbin-libdir OperaMate.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OperaMate.buildbin-libdir OperaMate_1.2.0.tar.gz >OperaMate.Rcheck\00install.out 2>&1 && cp OperaMate.Rcheck\00install.out OperaMate-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=OperaMate.buildbin-libdir --install="check:OperaMate-install.out" --force-multiarch --no-vignettes --timings OperaMate_1.2.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/OperaMate.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OperaMate/DESCRIPTION' ... OK
* this is package 'OperaMate' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OperaMate' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [21s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
operaMate       6.81   1.23    8.11
cellSigAnalysis 0.81   0.16    5.68
** running examples for arch 'x64' ... [16s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
operaMate 6.75   0.89    7.48
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'OperaMate' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'OperaMate' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OperaMate' as OperaMate_1.2.0.zip
* DONE (OperaMate)

name	user	system	elapsed
GenerateReport	0.03	0.00	0.03
cellData-class	0	0	0
cellLoad	0.07	0.00	0.06
cellMean	0.01	0.00	0.02
cellNorm	0	0	0
cellQC	0.06	0.01	0.08
cellSig	0.41	0.00	0.40
cellSigAnalysis	0.81	0.16	5.68
cellSigplot	0.18	0.02	0.18
cellViz	0.18	0.06	0.25
data	0.03	0.00	0.04
expData-class	0	0	0
loadAll	0.41	0.00	0.40
operaMate	6.81	1.23	8.11
parseTemplete	0.03	0.00	0.03
plateViz	0.30	0.03	0.33

name	user	system	elapsed
GenerateReport	0.02	0.00	0.02
cellData-class	0	0	0
cellLoad	0.04	0.00	0.04
cellMean	0	0	0
cellNorm	0.02	0.00	0.02
cellQC	0.08	0.00	0.08
cellSig	0.5	0.0	0.5
cellSigAnalysis	1.43	0.17	0.92
cellSigplot	0.19	0.00	0.19
cellViz	0.22	0.05	0.27
data	0.03	0.00	0.03
expData-class	0	0	0
loadAll	0.47	0.00	0.47
operaMate	6.75	0.89	7.48
parseTemplete	0.03	0.00	0.03
plateViz	0.34	0.03	0.38