MergeMaid 2.42.0
Xiaogang Zhong
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/MergeMaid | | Last Changed Rev: 109589 / Revision: 116712 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ WARNINGS ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### rm -rf MergeMaid.buildbin-libdir MergeMaid.Rcheck && mkdir MergeMaid.buildbin-libdir MergeMaid.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MergeMaid.buildbin-libdir MergeMaid_2.42.0.tar.gz >MergeMaid.Rcheck\00install.out 2>&1 && cp MergeMaid.Rcheck\00install.out MergeMaid-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MergeMaid.buildbin-libdir --install="check:MergeMaid-install.out" --force-multiarch --no-vignettes --timings MergeMaid_2.42.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/MergeMaid.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MergeMaid/DESCRIPTION' ... OK
* this is package 'MergeMaid' version '2.42.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MergeMaid' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'MASS' 'methods' 'survival'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.fdr.mergeCor: no visible global function definition for '.getnull'
.mergemodel: no visible global function definition for 'coxph'
maxintcor: no visible global function definition for 'ginv'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic '[' and siglist 'mergeExpressionSet,ANY,ANY,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [73s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
intcorDens 31.42 0.03 31.51
class.mergeExpressionSet 13.98 0.00 13.98
intCor 6.47 0.00 6.47
class.mergeCor 5.69 0.02 5.71
mergeExprs 5.15 0.00 6.59
** running examples for arch 'x64' ... [81s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
intcorDens 35.04 0.03 35.07
class.mergeExpressionSet 15.95 0.01 16.50
intCor 7.51 0.02 7.54
class.mergeCor 6.24 0.00 6.24
mergeExprs 5.49 0.00 5.49
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'D:/biocbld/bbs-3.2-bioc/meat/MergeMaid.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'MergeMaid' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'MergeMaid'
Creating a generic function for 'hist' from package 'graphics' in package 'MergeMaid'
Creating a generic function for 'summary' from package 'base' in package 'MergeMaid'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'MergeMaid' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MergeMaid' as MergeMaid_2.42.0.zip
* DONE (MergeMaid)