MSnbase 1.18.1
Laurent Gatto
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/MSnbase | | Last Changed Rev: 114028 / Revision: 116712 | | Last Changed Date: 2016-02-25 14:19:25 -0800 (Thu, 25 Feb 2016) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | ERROR | | |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | [ OK ] | OK | OK | OK |  |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf MSnbase.buildbin-libdir && mkdir MSnbase.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/MSnbase_1.18.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=MSnbase.buildbin-libdir --merge-multiarch MSnbase_1.18.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL MSnbase_1.18.1.zip && rm MSnbase_1.18.1.tar.gz MSnbase_1.18.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 1449k 100 1449k 0 0 48.8M 0 --:--:-- --:--:-- --:--:-- 58.9M
install for i386
* installing *source* package 'MSnbase' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c imp_neighbour_avg.cpp -o imp_neighbour_avg.o
g++ -m32 -shared -s -static-libgcc -o MSnbase.dll tmp.def RcppExports.o imp_neighbour_avg.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/MSnbase.buildbin-libdir/MSnbase/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a new generic function for 'smooth' in package 'MSnbase'
Creating a generic function for 't' from package 'base' in package 'MSnbase'
Creating a generic function for 'scale' from package 'base' in package 'MSnbase'
in method for 'coerce' with signature '"IBSpectra","MSnSet"': no definition for class "IBSpectra"
Creating a generic function for 'split' from package 'base' in package 'MSnbase'
** help
*** installing help indices
** building package indices
** installing vignettes
'MSnbase-demo.Rnw'
'MSnbase-development.Rnw'
'MSnbase-io.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'MSnbase' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c imp_neighbour_avg.cpp -o imp_neighbour_avg.o
g++ -m64 -shared -s -static-libgcc -o MSnbase.dll tmp.def RcppExports.o imp_neighbour_avg.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/MSnbase.buildbin-libdir/MSnbase/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSnbase' as MSnbase_1.18.1.zip
* DONE (MSnbase)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'MSnbase' successfully unpacked and MD5 sums checked