GGtools 5.6.0
VJ Carey
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/GGtools | | Last Changed Rev: 109589 / Revision: 116712 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | WARNINGS | [ OK ] | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd GGtools.buildbin-libdir/GGtools && zip -r ../../GGtools_5.6.0.zip . & cd ../..
###
##############################################################################
##############################################################################
Scanning files
adding: CITATION (188 bytes security) (deflated 53%)
adding: cloud/ (208 bytes security) (stored 0%)
adding: cloud/ciseqByCluster.R (188 bytes security) (deflated 60%)
adding: cloud/newtest.R (188 bytes security) (deflated 41%)
adding: data/ (208 bytes security) (stored 0%)
adding: data/b1.rda (188 bytes security) (stored 0%)
adding: data/b2.rda (188 bytes security) (stored 0%)
adding: data/datalist (188 bytes security) (stored 0%)
adding: data/eset.rda (188 bytes security) (deflated 0%)
adding: data/hg19.si.df.rda (188 bytes security) (stored 0%)
adding: data/hmm878.rda (188 bytes security) (deflated 0%)
adding: data/lgeu.rda (188 bytes security) (deflated 0%)
adding: data/strMultPop.rda (188 bytes security) (deflated 0%)
adding: DESCRIPTION (188 bytes security) (deflated 46%)
adding: doc/ (208 bytes security) (stored 0%)
adding: doc/GGtools.pdf (188 bytes security) (deflated 57%)
adding: doc/GGtools.R (188 bytes security) (deflated 76%)
adding: doc/GGtools.Rnw (188 bytes security) (deflated 59%)
adding: doc/index.html (188 bytes security) (deflated 58%)
adding: extpacksupp/ (208 bytes security) (stored 0%)
adding: extpacksupp/DESCRIPTION.proto (188 bytes security) (deflated 27%)
adding: extpacksupp/zzz.R (188 bytes security) (deflated 45%)
adding: hapmap/ (208 bytes security) (stored 0%)
adding: hapmap/relationships_w_pops_051208.txt (188 bytes security) (deflated 80%)
adding: hapmap/smallc20CEU.txt.gz (188 bytes security) (stored 0%)
adding: hapmap/src.rel.txt (188 bytes security) (deflated 5%)
adding: help/ (208 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 80%)
adding: help/GGtools.rdb (188 bytes security) (deflated 1%)
adding: help/GGtools.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (208 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 88%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 65%)
adding: MD5 (188 bytes security) (deflated 47%)
adding: Meta/ (208 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 64%)
adding: NEWS (188 bytes security) (deflated 57%)
adding: oldman/ (208 bytes security) (stored 0%)
adding: oldman/best.cis.eQTLs.Rd (188 bytes security) (deflated 55%)
adding: oldman/calfig.Rd (188 bytes security) (deflated 51%)
adding: oldman/cisProxScores-class.Rd (188 bytes security) (deflated 55%)
adding: oldman/cisProxScores.Rd (188 bytes security) (deflated 61%)
adding: oldman/clipPCs.Rd (188 bytes security) (deflated 52%)
adding: oldman/degnerASE01.Rd (188 bytes security) (deflated 62%)
adding: oldman/dropMonomorphies.Rd (188 bytes security) (deflated 48%)
adding: oldman/eqtlEstimatesManager-class.Rd (188 bytes security) (deflated 55%)
adding: oldman/eqtlFDRtab-class.Rd (188 bytes security) (deflated 57%)
adding: oldman/eqtlTests.Rd (188 bytes security) (deflated 58%)
adding: oldman/eqtlTestsManager-class.Rd (188 bytes security) (deflated 66%)
adding: oldman/ex6.Rd (188 bytes security) (deflated 63%)
adding: oldman/exome_minp.Rd (188 bytes security) (deflated 49%)
adding: oldman/externalize.Rd (188 bytes security) (deflated 52%)
adding: oldman/geneIndcol.Rd (188 bytes security) (deflated 51%)
adding: oldman/geneRanges.Rd (188 bytes security) (deflated 52%)
adding: oldman/genewiseFDRtab.Rd (188 bytes security) (deflated 53%)
adding: oldman/GGtools-package.Rd (188 bytes security) (deflated 47%)
adding: oldman/gwSnpTests.Rd (188 bytes security) (deflated 55%)
adding: oldman/hla2set.Rd (188 bytes security) (deflated 46%)
adding: oldman/hmceuB36.2021.Rd (188 bytes security) (deflated 53%)
adding: oldman/imphm2_1KG_20.Rd (188 bytes security) (deflated 54%)
adding: oldman/m20.Rd (188 bytes security) (deflated 44%)
adding: oldman/makeCommonSNPs.Rd (188 bytes security) (deflated 53%)
adding: oldman/manhPlot.Rd (188 bytes security) (deflated 49%)
adding: oldman/mkCisTransDirector.Rd (188 bytes security) (deflated 51%)
adding: oldman/mrefhap2sm.Rd (188 bytes security) (deflated 48%)
adding: oldman/multiCisDirector-class.Rd (188 bytes security) (deflated 50%)
adding: oldman/pcChooser.Rd (188 bytes security) (deflated 50%)
adding: oldman/permEx.Rd (188 bytes security) (deflated 47%)
adding: oldman/plot-methods.Rd (188 bytes security) (deflated 62%)
adding: oldman/probeLocations.Rd (188 bytes security) (deflated 56%)
adding: oldman/relocate.Rd (188 bytes security) (deflated 51%)
adding: oldman/sm2ped.Rd (188 bytes security) (deflated 50%)
adding: oldman/topSnps-methods.Rd (188 bytes security) (deflated 59%)
adding: oldman/transManager-class.Rd (188 bytes security) (deflated 50%)
adding: oldman/transScores.Rd (188 bytes security) (deflated 61%)
adding: oldman/transTab.Rd (188 bytes security) (deflated 47%)
adding: oldman/vcf2sm-methods.Rd (188 bytes security) (deflated 40%)
adding: oldman/vcf2sm.Rd (188 bytes security) (deflated 45%)
adding: oldman/X2chunk.Rd (188 bytes security) (deflated 53%)
adding: oldRsrc/ (208 bytes security) (stored 0%)
adding: oldRsrc/allS4.R (188 bytes security) (deflated 73%)
adding: oldRsrc/bestCis.R (188 bytes security) (deflated 65%)
adding: oldRsrc/bindScores.R (188 bytes security) (deflated 51%)
adding: oldRsrc/cisFDR.R (188 bytes security) (deflated 78%)
adding: oldRsrc/cisgetter.R (188 bytes security) (deflated 70%)
adding: oldRsrc/cisSnpTests.R (188 bytes security) (deflated 61%)
adding: oldRsrc/clipPCs.R (188 bytes security) (deflated 46%)
adding: oldRsrc/comb.R (188 bytes security) (deflated 68%)
adding: oldRsrc/egtset.R (188 bytes security) (deflated 57%)
adding: oldRsrc/eqtlEstimates.R (188 bytes security) (deflated 66%)
adding: oldRsrc/exome_minp.R (188 bytes security) (deflated 68%)
adding: oldRsrc/externalize.R (188 bytes security) (deflated 67%)
adding: oldRsrc/feqtltests.R (188 bytes security) (deflated 62%)
adding: oldRsrc/filterCode.R (188 bytes security) (deflated 28%)
adding: oldRsrc/fullsynth.R (188 bytes security) (deflated 72%)
adding: oldRsrc/geneRanges.R (188 bytes security) (deflated 61%)
adding: oldRsrc/geneTrack.R (188 bytes security) (deflated 48%)
adding: oldRsrc/getTransScores.R (188 bytes security) (deflated 51%)
adding: oldRsrc/gwSnpScreen.R (188 bytes security) (deflated 50%)
adding: oldRsrc/interleave2cis.R (188 bytes security) (deflated 47%)
adding: oldRsrc/machutils.R (188 bytes security) (deflated 57%)
adding: oldRsrc/minp.R (188 bytes security) (deflated 58%)
adding: oldRsrc/multff.R (188 bytes security) (deflated 74%)
adding: oldRsrc/newEQTL.R (188 bytes security) (deflated 70%)
adding: oldRsrc/pcc.R (188 bytes security) (deflated 47%)
adding: oldRsrc/permEx.R (188 bytes security) (deflated 40%)
adding: oldRsrc/probeloc.R (188 bytes security) (deflated 64%)
adding: oldRsrc/regressOut.R (188 bytes security) (deflated 28%)
adding: oldRsrc/scoresInRanges.R (188 bytes security) (deflated 62%)
adding: oldRsrc/shiftRight.R (188 bytes security) (deflated 30%)
adding: oldRsrc/snp130locs.R (188 bytes security) (deflated 25%)
adding: oldRsrc/sumDirectors.R (188 bytes security) (deflated 57%)
adding: oldRsrc/X2chunk.R (188 bytes security) (deflated 61%)
adding: oldRsrc/zzz.R (188 bytes security) (deflated 13%)
adding: parts/ (208 bytes security) (stored 0%)
adding: parts/20.rda (188 bytes security) (deflated 0%)
adding: parts/21.rda (188 bytes security) (deflated 0%)
adding: provenance/ (208 bytes security) (stored 0%)
adding: provenance/human/ (208 bytes security) (stored 0%)
adding: provenance/human/doallgzOct17b.R (188 bytes security) (deflated 39%)
adding: provenance/human/getall.sh (188 bytes security) (deflated 93%)
adding: provenance/human/notes.txt (188 bytes security) (deflated 68%)
adding: provenance/mouse/ (208 bytes security) (stored 0%)
adding: provenance/mouse/notes.txt (188 bytes security) (deflated 38%)
adding: pup/ (208 bytes security) (stored 0%)
adding: pup/combn238_chr6.pup (188 bytes security) (deflated 69%)
adding: R/ (208 bytes security) (stored 0%)
adding: R/GGtools (188 bytes security) (deflated 41%)
adding: R/GGtools.rdb (188 bytes security) (deflated 20%)
adding: R/GGtools.rdx (188 bytes security) (deflated 3%)
adding: rdas/ (208 bytes security) (stored 0%)
adding: rdas/ceu_21.rda (188 bytes security) (deflated 1%)
adding: rdas/ceu_22.rda (188 bytes security) (deflated 1%)
adding: scripts/ (208 bytes security) (stored 0%)
adding: scripts/lkme.pdf (188 bytes security) (deflated 10%)
adding: scripts/lkme.Rnw (188 bytes security) (deflated 52%)
adding: vcf/ (208 bytes security) (stored 0%)
adding: vcf/c20exch.vcf.gz (188 bytes security) (deflated 0%)
adding: vcf/c20exch.vcf.gz.tbi (188 bytes security) (deflated 1%)
adding: vcf/CEU.exon.2010_09.genotypes.vcf.gz (188 bytes security) (deflated 0%)
adding: vcf/CEU.exon.2010_09.genotypes.vcf.gz.tbi (188 bytes security) (deflated 9%)
adding: vcf/provenance.txt (188 bytes security) (deflated 18%)
adding: vcf/valid-4.0.vcf.gz (188 bytes security) (stored 0%)