BioC 3.2: CHECK report for FlowRepositoryR on moscato1

Package: FlowRepositoryR

Version: 1.2.0

Command: rm -rf FlowRepositoryR.buildbin-libdir FlowRepositoryR.Rcheck && mkdir FlowRepositoryR.buildbin-libdir FlowRepositoryR.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FlowRepositoryR.buildbin-libdir FlowRepositoryR_1.2.0.tar.gz >FlowRepositoryR.Rcheck\00install.out 2>&1 && cp FlowRepositoryR.Rcheck\00install.out FlowRepositoryR-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=FlowRepositoryR.buildbin-libdir --install="check:FlowRepositoryR-install.out" --force-multiarch --no-vignettes --timings FlowRepositoryR_1.2.0.tar.gz

StartedAt: 2016-04-23 02:22:01 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 02:24:25 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 144.4 seconds

RetCode: 0

Status:  OK

CheckDir: FlowRepositoryR.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf FlowRepositoryR.buildbin-libdir FlowRepositoryR.Rcheck && mkdir FlowRepositoryR.buildbin-libdir FlowRepositoryR.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FlowRepositoryR.buildbin-libdir FlowRepositoryR_1.2.0.tar.gz >FlowRepositoryR.Rcheck\00install.out 2>&1 && cp FlowRepositoryR.Rcheck\00install.out FlowRepositoryR-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=FlowRepositoryR.buildbin-libdir --install="check:FlowRepositoryR-install.out" --force-multiarch --no-vignettes --timings FlowRepositoryR_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/FlowRepositoryR.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FlowRepositoryR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FlowRepositoryR' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FlowRepositoryR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [24s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
download-methods 0.17   0.04   15.21
** running examples for arch 'x64' ... [16s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
download-methods 0.14   0.03   10.11
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [8s]
 [8s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [9s]
 [9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'FlowRepositoryR' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'FlowRepositoryR'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FlowRepositoryR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FlowRepositoryR' as FlowRepositoryR_1.2.0.zip
* DONE (FlowRepositoryR)

name	user	system	elapsed
attachmentProxy-class	0.35	0.07	1.44
download-methods	0.17	0.04	15.21
fcsProxy-class	0.05	0.00	0.40
fileProxy-class	0.03	0.00	0.34
flowRep.get	0.08	0.00	0.38
flowRep.ls	0.03	0.00	0.48
flowRep.search	0.03	0.00	0.37
flowRepData-class	0.03	0.00	0.39
flowRepOrganization-class	0.08	0.00	0.37
forgetFlowRepositoryCredentials	0	0	0
getFlowRepositoryURL	0	0	0
id-methods	0.08	0.00	1.72
is.downloaded-methods	0.04	0.00	1.37
setFlowRepositoryCredentials	0	0	0
setFlowRepositoryURL	0	0	0

name	user	system	elapsed
attachmentProxy-class	0.34	0.03	1.44
download-methods	0.14	0.03	10.11
fcsProxy-class	0.06	0.00	0.37
fileProxy-class	0.06	0.00	0.37
flowRep.get	0.03	0.00	0.92
flowRep.ls	0.00	0.01	0.39
flowRep.search	0.04	0.00	0.40
flowRepData-class	0.05	0.00	0.36
flowRepOrganization-class	0.05	0.00	0.36
forgetFlowRepositoryCredentials	0	0	0
getFlowRepositoryURL	0	0	0
id-methods	0.07	0.00	0.42
is.downloaded-methods	0.08	0.00	0.39
setFlowRepositoryCredentials	0	0	0
setFlowRepositoryURL	0	0	0