BioC 3.2: CHECK report for FRGEpistasis on windows1.bioconductor.org

Package: FRGEpistasis

Version: 1.6.0

Command: rm -rf FRGEpistasis.buildbin-libdir FRGEpistasis.Rcheck && mkdir FRGEpistasis.buildbin-libdir FRGEpistasis.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FRGEpistasis.buildbin-libdir FRGEpistasis_1.6.0.tar.gz >FRGEpistasis.Rcheck\00install.out 2>&1 && cp FRGEpistasis.Rcheck\00install.out FRGEpistasis-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=FRGEpistasis.buildbin-libdir --install="check:FRGEpistasis-install.out" --force-multiarch --no-vignettes --timings FRGEpistasis_1.6.0.tar.gz

StartedAt: 2015-10-27 01:50:30 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 01:55:14 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 283.7 seconds

RetCode: 0

Status:  OK

CheckDir: FRGEpistasis.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf FRGEpistasis.buildbin-libdir FRGEpistasis.Rcheck && mkdir FRGEpistasis.buildbin-libdir FRGEpistasis.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FRGEpistasis.buildbin-libdir FRGEpistasis_1.6.0.tar.gz >FRGEpistasis.Rcheck\00install.out 2>&1 && cp FRGEpistasis.Rcheck\00install.out FRGEpistasis-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=FRGEpistasis.buildbin-libdir --install="check:FRGEpistasis-install.out" --force-multiarch --no-vignettes --timings FRGEpistasis_1.6.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/FRGEpistasis.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FRGEpistasis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FRGEpistasis' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FRGEpistasis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [106s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
pCAPiontwiseEpistasis 96.02   0.06   96.08
** running examples for arch 'x64' ... [121s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
pCAPiontwiseEpistasis 109.76   0.13  109.91
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/biocbld/bbs-3.2-bioc/meat/FRGEpistasis.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'FRGEpistasis' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FRGEpistasis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FRGEpistasis' as FRGEpistasis_1.6.0.zip
* DONE (FRGEpistasis)

name	user	system	elapsed
fRGEpistasis	2.75	0.00	2.75
fRGInteraction	0	0	0
fourierExpansion	0.11	0.00	0.11
frgEpistasisTest	1.79	0.00	1.79
innerEpi	0.07	0.00	0.07
innerSnpListInteraction	0.03	0.00	0.03
logTransPheno	0	0	0
outerEpi	0.53	0.02	0.54
outerSnpListInteraction	0.03	0.00	0.03
pCAInteraction	1.23	0.01	1.25
pCAPiontwiseEpistasis	96.02	0.06	96.08
pointwiseInteraction	1.14	0.00	1.14
rankTransPheno	0	0	0
reduceGeno	0.50	0.02	0.52
snpPairInteraction	0.02	0.00	0.01

name	user	system	elapsed
fRGEpistasis	3.39	0.03	3.42
fRGInteraction	0	0	0
fourierExpansion	0.11	0.00	0.11
frgEpistasisTest	1.74	0.00	1.74
innerEpi	0.06	0.00	0.06
innerSnpListInteraction	0.03	0.00	0.03
logTransPheno	0	0	0
outerEpi	0.61	0.00	0.61
outerSnpListInteraction	0.04	0.00	0.04
pCAInteraction	1.58	0.00	1.58
pCAPiontwiseEpistasis	109.76	0.13	109.91
pointwiseInteraction	1.44	0.00	1.43
rankTransPheno	0	0	0
reduceGeno	0.54	0.02	0.56
snpPairInteraction	0	0	0