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BioC 3.2: BUILD BIN report for CorMut on oaxaca

This page was generated on 2016-04-23 10:25:59 -0700 (Sat, 23 Apr 2016).

Package 227/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CorMut 1.12.0
Zhenpeng Li
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/CorMut
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CorMut
Version: 1.12.0
Command: rm -rf CorMut.buildbin-libdir && mkdir CorMut.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CorMut_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CorMut.buildbin-libdir
StartedAt: 2016-04-23 05:36:04 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:36:12 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 8.3 seconds
RetCode: 0
Status:  OK 
PackageFile: CorMut_1.12.0.tgz
PackageFileSize: 524.6 KiB

Command output

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###
### Running command:
###
###   rm -rf CorMut.buildbin-libdir && mkdir CorMut.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CorMut_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CorMut.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CorMut.buildbin-libdir CorMut_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CorMut’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘CorMut’
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘seq_num.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘kaks.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘lod.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘q.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘ka.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘ks.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘mi.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘p.value.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘ckaks.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘method.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘positiveSite01.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘positiveSite02.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘state_1.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘statistic_1.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘state_2.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
Warning in .recursiveCallTest(body, fname) :
  the body of the generic function for ‘statistic_2.CorMut’ calls 'standardGeneric' to dispatch on a different name ("aslot")!
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CorMut)