ChemmineOB 1.8.2
Thomas Girke
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/ChemmineOB | | Last Changed Rev: 112131 / Revision: 116712 | | Last Changed Date: 2016-01-04 07:29:31 -0800 (Mon, 04 Jan 2016) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/ChemmineOB_1.8.2.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=ChemmineOB.buildbin-libdir --merge-multiarch ChemmineOB_1.8.2.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL ChemmineOB_1.8.2.zip && rm ChemmineOB_1.8.2.tar.gz ChemmineOB_1.8.2.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 968k 100 968k 0 0 47.3M 0 --:--:-- --:--:-- --:--:-- 63.0M
install for i386
* installing *source* package 'ChemmineOB' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -Ic:/openbabel_src/i386/include -O2 -Wall -mtune=core2 -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -Ic:/openbabel_src/i386/include -O2 -Wall -mtune=core2 -c canonical.cpp -o canonical.o
g++ -m32 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -Lc:/openbabel/i386/bin -lopenbabel -LD:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'ChemmineOB'
in method for 'copyToR' with signature '"_p_std::pair<(unsigned int,unsigned int)>"': no definition for class "_p_std::pair<(unsigned int,unsigned int)>"
in method for 'copyToR' with signature '"_p_OpenBabel::DoubleType"': no definition for class "_p_OpenBabel::DoubleType"
in method for 'copyToR' with signature '"_p_OpenBabel::CharPtrLess"': no definition for class "_p_OpenBabel::CharPtrLess"
in method for 'copyToR' with signature '"_p_OpenBabel::FptIndexHeader"': no definition for class "_p_OpenBabel::FptIndexHeader"
in method for 'copyToR' with signature '"_p_OpenBabel::LineSearchType"': no definition for class "_p_OpenBabel::LineSearchType"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ChemmineOB' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -Ic:/openbabel_src/x64/include -O2 -Wall -mtune=core2 -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local323/include" -Ic:/openbabel_src/x64/include -O2 -Wall -mtune=core2 -c canonical.cpp -o canonical.o
g++ -m64 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -Lc:/openbabel/x64/bin -lopenbabel -LD:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChemmineOB' as ChemmineOB_1.8.2.zip
* DONE (ChemmineOB)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'ChemmineOB' successfully unpacked and MD5 sums checked