BioC 3.2: CHECK report for ChIPseeker on moscato1

Package: ChIPseeker

Version: 1.6.7

Command: rm -rf ChIPseeker.buildbin-libdir ChIPseeker.Rcheck && mkdir ChIPseeker.buildbin-libdir ChIPseeker.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChIPseeker.buildbin-libdir ChIPseeker_1.6.7.tar.gz >ChIPseeker.Rcheck\00install.out 2>&1 && cp ChIPseeker.Rcheck\00install.out ChIPseeker-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ChIPseeker.buildbin-libdir --install="check:ChIPseeker-install.out" --force-multiarch --no-vignettes --timings ChIPseeker_1.6.7.tar.gz

StartedAt: 2016-04-23 00:34:31 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 00:40:18 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 347.3 seconds

RetCode: 0

Status:  OK

CheckDir: ChIPseeker.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf ChIPseeker.buildbin-libdir ChIPseeker.Rcheck && mkdir ChIPseeker.buildbin-libdir ChIPseeker.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChIPseeker.buildbin-libdir ChIPseeker_1.6.7.tar.gz >ChIPseeker.Rcheck\00install.out 2>&1 && cp ChIPseeker.Rcheck\00install.out ChIPseeker-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ChIPseeker.buildbin-libdir --install="check:ChIPseeker-install.out" --force-multiarch --no-vignettes --timings ChIPseeker_1.6.7.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/ChIPseeker.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChIPseeker/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChIPseeker' version '1.6.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChIPseeker' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annotatePeak: no visible global function definition for 'repl'
getNearestFeatureIndicesAndDistances: no visible global function
  definition for 'seqlevels<-'
getNearestFeatureIndicesAndDistances: no visible global function
  definition for 'seqlevels'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
** running examples for arch 'x64' ... [11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/ChIPseeker.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'ChIPseeker' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ChIPseeker' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPseeker' as ChIPseeker_1.6.7.zip
* DONE (ChIPseeker)

name	user	system	elapsed
annotatePeak	0	0	0
plotAnnoPie.csAnno	0	0	0
plotDistToTSS.data.frame	0	0	0
readPeakFile	0.1	0.0	0.1
vennplot	0	0	0

name	user	system	elapsed
annotatePeak	0	0	0
plotAnnoPie.csAnno	0	0	0
plotDistToTSS.data.frame	0	0	0
readPeakFile	0.23	0.00	0.24
vennplot	0	0	0