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BioC 3.2: BUILD BIN report for ChAMP on oaxaca

This page was generated on 2016-04-23 10:27:17 -0700 (Sat, 23 Apr 2016).

Package 158/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChAMP 1.8.2
Tiffany Morris
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/ChAMP
Last Changed Rev: 116669 / Revision: 116712
Last Changed Date: 2016-04-21 12:55:18 -0700 (Thu, 21 Apr 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: ChAMP
Version: 1.8.2
Command: rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChAMP_1.8.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChAMP.buildbin-libdir
StartedAt: 2016-04-23 05:32:47 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:33:13 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 26.7 seconds
RetCode: 0
Status:  OK 
PackageFile: ChAMP_1.8.2.tgz
PackageFileSize: 3.32 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChAMP_1.8.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChAMP.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ChAMP.buildbin-libdir ChAMP_1.8.2.tar.gz'
>>>>>>> 

* installing *source* package ‘ChAMP’ ...
** R
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Warning: replacing previous import ‘limma::ebayes’ by ‘RPMM::ebayes’ when loading ‘ChAMP’
Warning: replacing previous import ‘plyr::desc’ by ‘IRanges::desc’ when loading ‘ChAMP’
Warning: replacing previous import ‘wateRmelon::colnames’ by ‘IRanges::colnames’ when loading ‘ChAMP’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Warning: replacing previous import ‘limma::ebayes’ by ‘RPMM::ebayes’ when loading ‘ChAMP’
Warning: replacing previous import ‘plyr::desc’ by ‘IRanges::desc’ when loading ‘ChAMP’
Warning: replacing previous import ‘wateRmelon::colnames’ by ‘IRanges::colnames’ when loading ‘ChAMP’
* DONE (ChAMP)