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BioC 3.2: BUILD BIN report for Biostrings on moscato1

This page was generated on 2016-04-23 10:15:23 -0700 (Sat, 23 Apr 2016).

Package 109/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Biostrings 2.38.4
H. Pages
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/Biostrings
Last Changed Rev: 113428 / Revision: 116712
Last Changed Date: 2016-02-08 13:40:08 -0800 (Mon, 08 Feb 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: Biostrings
Version: 2.38.4
Command: cd Biostrings.buildbin-libdir/Biostrings && zip -r ../../Biostrings_2.38.4.zip . & cd ../..
StartedAt: 2016-04-23 09:20:53 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 09:21:50 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 56.9 seconds
RetCode: 0
Status:  OK  
PackageFile: Biostrings_2.38.4.zip
PackageFileSize: 25.93 MiB

Command output

##############################################################################
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###
### Running command:
###
###   cd Biostrings.buildbin-libdir/Biostrings && zip -r ../../Biostrings_2.38.4.zip . & cd ../..
###
##############################################################################
##############################################################################


Scanning files 
  adding: data/ (208 bytes security) (stored 0%)
  adding: data/BLOSUM100.rda (188 bytes security) (stored 0%)
  adding: data/BLOSUM45.rda (188 bytes security) (stored 0%)
  adding: data/BLOSUM50.rda (188 bytes security) (stored 0%)
  adding: data/BLOSUM62.rda (188 bytes security) (stored 0%)
  adding: data/BLOSUM80.rda (188 bytes security) (stored 0%)
  adding: data/HNF4alpha.rda (188 bytes security) (stored 0%)
  adding: data/PAM120.rda (188 bytes security) (stored 0%)
  adding: data/PAM250.rda (188 bytes security) (stored 0%)
  adding: data/PAM30.rda (188 bytes security) (stored 0%)
  adding: data/PAM40.rda (188 bytes security) (stored 0%)
  adding: data/PAM70.rda (188 bytes security) (stored 0%)
  adding: data/phiX174Phage.rda (188 bytes security) (deflated 1%)
  adding: data/srPhiX174.rda (188 bytes security) (deflated 4%)
  adding: data/yeastSEQCHR1.rda (188 bytes security) (deflated 0%)
  adding: DESCRIPTION (188 bytes security) (deflated 53%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/Biostrings2Classes.pdf (188 bytes security) (deflated 6%)
  adding: doc/Biostrings2Classes.R (188 bytes security) (deflated 84%)
  adding: doc/Biostrings2Classes.Rnw (188 bytes security) (deflated 63%)
  adding: doc/BiostringsQuickOverview.pdf (188 bytes security) (deflated 6%)
  adding: doc/BiostringsQuickOverview.Rnw (188 bytes security) (deflated 73%)
  adding: doc/index.html (188 bytes security) (deflated 78%)
  adding: doc/matchprobes.pdf (188 bytes security) (deflated 8%)
  adding: doc/matchprobes.R (188 bytes security) (deflated 71%)
  adding: doc/matchprobes.Rnw (188 bytes security) (deflated 62%)
  adding: doc/MultipleAlignments.pdf (188 bytes security) (deflated 10%)
  adding: doc/MultipleAlignments.R (188 bytes security) (deflated 80%)
  adding: doc/MultipleAlignments.Rnw (188 bytes security) (deflated 63%)
  adding: doc/PairwiseAlignments.pdf (188 bytes security) (deflated 15%)
  adding: doc/PairwiseAlignments.R (188 bytes security) (deflated 84%)
  adding: doc/PairwiseAlignments.Rnw (188 bytes security) (deflated 76%)
  adding: extdata/ (208 bytes security) (stored 0%)
  adding: extdata/dm3_upstream2000.fa.gz (188 bytes security) (deflated 3%)
  adding: extdata/fastaEx.fa (188 bytes security) (deflated 46%)
  adding: extdata/hg18chr8_gap.txt (188 bytes security) (deflated 55%)
  adding: extdata/hg18chrY_gap.txt (188 bytes security) (deflated 61%)
  adding: extdata/msx2_mRNA.aln (188 bytes security) (deflated 87%)
  adding: extdata/Phylip.txt (188 bytes security) (deflated 68%)
  adding: extdata/README (188 bytes security) (deflated 35%)
  adding: extdata/Sc.fa (188 bytes security) (deflated 64%)
  adding: extdata/someORF.fa (188 bytes security) (deflated 70%)
  adding: extdata/someORF.fa.gz (188 bytes security) (deflated 1%)
  adding: extdata/Sp.fa (188 bytes security) (deflated 62%)
  adding: extdata/s_1_sequence.txt (188 bytes security) (deflated 72%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 88%)
  adding: help/Biostrings.rdb (188 bytes security) (deflated 1%)
  adding: help/Biostrings.rdx (188 bytes security) (stored 0%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 92%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: include/ (208 bytes security) (stored 0%)
  adding: include/Biostrings_defines.h (188 bytes security) (deflated 69%)
  adding: include/Biostrings_interface.h (188 bytes security) (deflated 65%)
  adding: include/_Biostrings_stubs.c (188 bytes security) (deflated 77%)
  adding: INDEX (188 bytes security) (deflated 68%)
  adding: libs/ (208 bytes security) (stored 0%)
  adding: libs/i386/ (208 bytes security) (stored 0%)
  adding: libs/i386/Biostrings.dll (188 bytes security) (deflated 56%)
  adding: libs/x64/ (208 bytes security) (stored 0%)
  adding: libs/x64/Biostrings.dll (188 bytes security) (deflated 55%)
  adding: MD5 (188 bytes security) (deflated 48%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/data.rds (188 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (deflated 1%)
  adding: Meta/links.rds (188 bytes security) (deflated 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 75%)
  adding: NEWS (188 bytes security) (deflated 65%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/Biostrings (188 bytes security) (deflated 41%)
  adding: R/Biostrings.rdb (188 bytes security) (deflated 34%)
  adding: R/Biostrings.rdx (188 bytes security) (deflated 6%)
  adding: unitTests/ (208 bytes security) (stored 0%)
  adding: unitTests/test_findPalindromes.R (188 bytes security) (deflated 85%)
  adding: unitTests/test_matchDNAPattern.R.FIXME (188 bytes security) (deflated 78%)
  adding: unitTests/test_matchPDict.R (188 bytes security) (deflated 76%)
  adding: unitTests/test_MultipleAlignment.R (188 bytes security) (deflated 88%)
  adding: unitTests/test_pairwiseAlignment.R (188 bytes security) (deflated 88%)
  adding: unitTests/test_twoWayAlphabetFrequency.R (188 bytes security) (deflated 78%)
  adding: unitTests/test_XString.R (188 bytes security) (deflated 68%)
  adding: unitTests/test_XStringSet.R (188 bytes security) (deflated 74%)
  adding: unitTests/test_XStringSetList.R (188 bytes security) (deflated 73%)