BioC 3.2: CHECK report for BiocCaseStudies on moscato1

Package: BiocCaseStudies

Version: 1.32.0

Command: rm -rf BiocCaseStudies.buildbin-libdir BiocCaseStudies.Rcheck && mkdir BiocCaseStudies.buildbin-libdir BiocCaseStudies.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocCaseStudies.buildbin-libdir BiocCaseStudies_1.32.0.tar.gz >BiocCaseStudies.Rcheck\00install.out 2>&1 && cp BiocCaseStudies.Rcheck\00install.out BiocCaseStudies-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=BiocCaseStudies.buildbin-libdir --install="check:BiocCaseStudies-install.out" --force-multiarch --no-vignettes --timings BiocCaseStudies_1.32.0.tar.gz

StartedAt: 2016-04-22 23:56:53 -0700 (Fri, 22 Apr 2016)

EndedAt: 2016-04-22 23:57:46 -0700 (Fri, 22 Apr 2016)

EllapsedTime: 53.6 seconds

RetCode: 0

Status:  OK

CheckDir: BiocCaseStudies.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf BiocCaseStudies.buildbin-libdir BiocCaseStudies.Rcheck && mkdir BiocCaseStudies.buildbin-libdir BiocCaseStudies.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocCaseStudies.buildbin-libdir BiocCaseStudies_1.32.0.tar.gz >BiocCaseStudies.Rcheck\00install.out 2>&1 && cp BiocCaseStudies.Rcheck\00install.out BiocCaseStudies-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=BiocCaseStudies.buildbin-libdir --install="check:BiocCaseStudies-install.out" --force-multiarch --no-vignettes --timings BiocCaseStudies_1.32.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/BiocCaseStudies.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocCaseStudies/DESCRIPTION' ... OK
* this is package 'BiocCaseStudies' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocCaseStudies' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'Biobase' 'methods' 'tools'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
fixedWidthCat: no visible global function definition for 'strbreak'
resample: no visible global function definition for 'pData'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.2-bioc/meat/BiocCaseStudies.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'BiocCaseStudies' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'BiocCaseStudies' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocCaseStudies' as BiocCaseStudies_1.32.0.zip
* DONE (BiocCaseStudies)

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