BioC 3.2: CHECK report for BioSeqClass on windows1.bioconductor.org

Package: BioSeqClass

Version: 1.28.0

Command: rm -rf BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && mkdir BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BioSeqClass.buildbin-libdir BioSeqClass_1.28.0.tar.gz >BioSeqClass.Rcheck\00install.out 2>&1 && cp BioSeqClass.Rcheck\00install.out BioSeqClass-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=BioSeqClass.buildbin-libdir --install="check:BioSeqClass-install.out" --force-multiarch --no-vignettes --timings BioSeqClass_1.28.0.tar.gz

StartedAt: 2015-10-27 00:05:57 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 00:09:05 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 187.3 seconds

RetCode: 0

Status:  OK

CheckDir: BioSeqClass.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && mkdir BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BioSeqClass.buildbin-libdir BioSeqClass_1.28.0.tar.gz >BioSeqClass.Rcheck\00install.out 2>&1 && cp BioSeqClass.Rcheck\00install.out BioSeqClass-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=BioSeqClass.buildbin-libdir --install="check:BioSeqClass-install.out" --force-multiarch --no-vignettes --timings BioSeqClass_1.28.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/BioSeqClass.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BioSeqClass/DESCRIPTION' ... OK
* this is package 'BioSeqClass' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BioSeqClass' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data      2.9Mb
    scripts   3.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'scatterplot3d'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'scatterplot3d'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
classify 4.25   0.09     7.2
** running examples for arch 'x64' ... [16s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
classify 4.64   0.04    6.32
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/BioSeqClass.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'BioSeqClass' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'BioSeqClass' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioSeqClass' as BioSeqClass_1.28.0.zip
* DONE (BioSeqClass)

name	user	system	elapsed
basic	0.64	0.06	0.70
classify	4.25	0.09	7.20
featureAAindex	0	0	0
featureBDNAVIDEO	0	0	0
featureBinary	0	0	0
featureCKSAAP	0	0	0
featureCTD	0	0	0
featureDIPRODB	0	0	0
featureDOMAIN	0.00	0.00	0.02
featureEvaluate	0	0	0
featureFragmentComposition	0	0	0
featureGapPairComposition	0	0	0
featureHydro	0	0	0
featurePSSM	0	0	0
featurePseudoAAComp	0	0	0
featureSSC	0	0	0
hr	0.02	0.00	0.01
model	1.12	0.04	1.16
performance	1.14	0.01	1.15
selectFFS	0.55	0.00	0.55

name	user	system	elapsed
basic	0.61	0.00	0.61
classify	4.64	0.04	6.32
featureAAindex	0	0	0
featureBDNAVIDEO	0.02	0.00	0.02
featureBinary	0	0	0
featureCKSAAP	0	0	0
featureCTD	0	0	0
featureDIPRODB	0	0	0
featureDOMAIN	0	0	0
featureEvaluate	0.01	0.00	0.01
featureFragmentComposition	0	0	0
featureGapPairComposition	0	0	0
featureHydro	0	0	0
featurePSSM	0	0	0
featurePseudoAAComp	0	0	0
featureSSC	0.02	0.00	0.01
hr	0	0	0
model	1.48	0.02	1.50
performance	1.34	0.00	1.35
selectFFS	0.53	0.01	0.54