Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: BUILD BIN report for BSgenome on windows1.bioconductor.org

This page was generated on 2015-10-27 17:28:08 -0400 (Tue, 27 Oct 2015).

Package 124/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.38.0
H. Pages
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/BSgenome
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BSgenome
Version: 1.38.0
Command: cd BSgenome.buildbin-libdir/BSgenome && zip -r ../../BSgenome_1.38.0.zip . & cd ../..
StartedAt: 2015-10-27 07:05:04 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 07:05:20 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 15.7 seconds
RetCode: 0
Status:  OK  
PackageFile: BSgenome_1.38.0.zip
PackageFileSize: 12.46 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd BSgenome.buildbin-libdir/BSgenome && zip -r ../../BSgenome_1.38.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: DESCRIPTION (188 bytes security) (deflated 55%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/BSgenomeForge.pdf (188 bytes security) (deflated 11%)
  adding: doc/BSgenomeForge.R (188 bytes security) (deflated 77%)
  adding: doc/BSgenomeForge.Rnw (188 bytes security) (deflated 73%)
  adding: doc/GenomeSearching.pdf (188 bytes security) (deflated 9%)
  adding: doc/GenomeSearching.R (188 bytes security) (deflated 81%)
  adding: doc/GenomeSearching.Rnw (188 bytes security) (deflated 68%)
  adding: doc/index.html (188 bytes security) (deflated 67%)
  adding: extdata/ (208 bytes security) (stored 0%)
  adding: extdata/ce2chrM.fa.gz (188 bytes security) (stored 0%)
  adding: extdata/ce2chrX.fa.gz (188 bytes security) (deflated 0%)
  adding: extdata/ce2dict0.fa (188 bytes security) (deflated 65%)
  adding: extdata/GentlemanLab/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/1000genomes/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-seed (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh (188 bytes security) (deflated 59%)
  adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed (188 bytes security) (deflated 48%)
  adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh (188 bytes security) (deflated 61%)
  adding: extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed (188 bytes security) (deflated 48%)
  adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed (188 bytes security) (deflated 50%)
  adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT (188 bytes security) (deflated 61%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed (188 bytes security) (deflated 56%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed (188 bytes security) (deflated 56%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/splitbigfasta.R (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed (188 bytes security) (deflated 57%)
  adding: extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed (188 bytes security) (deflated 57%)
  adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm6-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT (188 bytes security) (deflated 23%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh (188 bytes security) (deflated 59%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT (188 bytes security) (deflated 24%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R (188 bytes security) (deflated 58%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT (188 bytes security) (deflated 24%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R (188 bytes security) (deflated 58%)
  adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed (188 bytes security) (deflated 77%)
  adding: extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/splitbigfasta.R (188 bytes security) (deflated 57%)
  adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed (188 bytes security) (deflated 56%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed (188 bytes security) (deflated 82%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/splitbigfasta.R (188 bytes security) (deflated 47%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed (188 bytes security) (deflated 51%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed (188 bytes security) (deflated 57%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed (188 bytes security) (deflated 60%)
  adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed (188 bytes security) (deflated 48%)
  adding: extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-seed (188 bytes security) (deflated 58%)
  adding: extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R (188 bytes security) (deflated 57%)
  adding: extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed (188 bytes security) (deflated 59%)
  adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed (188 bytes security) (deflated 56%)
  adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed (188 bytes security) (deflated 66%)
  adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed (188 bytes security) (deflated 51%)
  adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8.masked-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed (188 bytes security) (deflated 52%)
  adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R (188 bytes security) (deflated 61%)
  adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed (188 bytes security) (deflated 57%)
  adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed (188 bytes security) (deflated 53%)
  adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R (188 bytes security) (deflated 58%)
  adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn6-seed (188 bytes security) (deflated 54%)
  adding: extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed (188 bytes security) (deflated 51%)
  adding: extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed (188 bytes security) (deflated 51%)
  adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed (188 bytes security) (deflated 46%)
  adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/ (208 bytes security) (stored 0%)
  adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/splitbigfasta.R (188 bytes security) (deflated 55%)
  adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed (188 bytes security) (deflated 56%)
  adding: extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed (188 bytes security) (deflated 49%)
  adding: extdata/GentlemanLab/bump_seed_version.sh (188 bytes security) (deflated 33%)
  adding: extdata/GentlemanLab/ForgeAll.R (188 bytes security) (deflated 79%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 85%)
  adding: help/BSgenome.rdb (188 bytes security) (deflated 1%)
  adding: help/BSgenome.rdx (188 bytes security) (stored 0%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 90%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 62%)
  adding: MD5 (188 bytes security) (deflated 66%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 72%)
  adding: NEWS (188 bytes security) (deflated 38%)
  adding: pkgtemplates/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/BSgenome_datapkg/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/BSgenome_datapkg/DESCRIPTION (188 bytes security) (deflated 38%)
  adding: pkgtemplates/BSgenome_datapkg/inst/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/BSgenome_datapkg/inst/extdata/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/BSgenome_datapkg/man/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/BSgenome_datapkg/man/package.Rd (188 bytes security) (deflated 62%)
  adding: pkgtemplates/BSgenome_datapkg/NAMESPACE (188 bytes security) (deflated 34%)
  adding: pkgtemplates/BSgenome_datapkg/R/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/BSgenome_datapkg/R/zzz.R (188 bytes security) (deflated 56%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION (188 bytes security) (deflated 39%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/inst/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/inst/extdata/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/man/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd (188 bytes security) (deflated 59%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE (188 bytes security) (deflated 32%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/R/ (208 bytes security) (stored 0%)
  adding: pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R (188 bytes security) (deflated 51%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/BSgenome (188 bytes security) (deflated 41%)
  adding: R/BSgenome.rdb (188 bytes security) (deflated 36%)
  adding: R/BSgenome.rdx (188 bytes security) (deflated 4%)