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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings MEDIPSData_1.40.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/MEDIPSData.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘MEDIPSData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MEDIPSData’ version ‘1.40.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MEDIPSData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 168.3Mb
  sub-directories of 1Mb or more:
    data      25.1Mb
    extdata  143.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... WARNING
File ‘data/datalist’ contains malformed line(s):
  ‘’
* checking data for non-ASCII characters ... WARNING
  Error loading dataset 'CS':
   Error in .requirePackage(package) : 
    unable to find required package 'MEDIPS'
  
  Error loading dataset 'DE_Input':
   Error in .requirePackage(package) : 
    unable to find required package 'MEDIPS'
  
  Error loading dataset 'DE_MeDIP':
   Error in .requirePackage(package) : 
    unable to find required package 'MEDIPS'
  
  Error loading dataset 'ROIs':
   Error in .requirePackage(package) : 
    unable to find required package 'GenomicRanges'
  
  Error loading dataset 'hESCs_Input':
   Error in .requirePackage(package) : 
    unable to find required package 'MEDIPS'
  
  Error loading dataset 'hESCs_MeDIP':
   Error in .requirePackage(package) : 
    unable to find required package 'MEDIPS'
  
  Error loading dataset 'qseaGLM':
   Error in .requirePackage(package) : 
    unable to find required package 'qsea'
  
  Error loading dataset 'qseaSet':
   Error in .requirePackage(package) : 
    unable to find required package 'qsea'
  
  Error loading dataset 'tcga_luad_lusc_450kmeth':
   Error in .requirePackage(package) : 
    unable to find required package 'GenomicRanges'
  
  Error loading dataset 'tfbs':
   Error in .requirePackage(package) : 
    unable to find required package 'GenomicRanges'
  
  The dataset(s) may use package(s) not declared in Depends/Imports.
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/MEDIPSData.Rcheck/00check.log’
for details.

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###
### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL MEDIPSData
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘MEDIPSData’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MEDIPSData)