| Back to Build/check report for BioC 3.19 experimental data |
|
This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 188/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| HIVcDNAvantWout03 1.44.0 (landing page) Chris Fraley
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
|
To the developers/maintainers of the HIVcDNAvantWout03 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HIVcDNAvantWout03 |
| Version: 1.44.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HIVcDNAvantWout03.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HIVcDNAvantWout03_1.44.0.tar.gz |
| StartedAt: 2024-10-17 11:33:10 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 11:33:21 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 11.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: HIVcDNAvantWout03.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HIVcDNAvantWout03.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HIVcDNAvantWout03_1.44.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/HIVcDNAvantWout03.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘HIVcDNAvantWout03/DESCRIPTION’ ... OK
* this is package ‘HIVcDNAvantWout03’ version ‘1.44.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HIVcDNAvantWout03’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... NOTE
Output for data("hiv1raw", package = "HIVcDNAvantWout03"):
Read 450000 items
Output for data("hiv2raw", package = "HIVcDNAvantWout03"):
Read 450000 items
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘hivData.pdf’
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... NONE
* checking package vignettes ... NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.19-data-experiment/meat/HIVcDNAvantWout03.Rcheck/00check.log’
for details.
HIVcDNAvantWout03.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL HIVcDNAvantWout03 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘HIVcDNAvantWout03’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices Read 450000 items Read 450000 items ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HIVcDNAvantWout03)