Back to Build/check report for BioC 3.19 experimental data |
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This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 106/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
DvDdata 1.40.0 (landing page) J. Saez-Rodriguez
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the DvDdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DvDdata |
Version: 1.40.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DvDdata_1.40.0.tar.gz |
StartedAt: 2024-10-17 11:18:54 -0400 (Thu, 17 Oct 2024) |
EndedAt: 2024-10-17 11:19:10 -0400 (Thu, 17 Oct 2024) |
EllapsedTime: 16.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: DvDdata.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DvDdata_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/DvDdata.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.5 LTS * using session charset: UTF-8 * checking for file ‘DvDdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DvDdata’ version ‘1.40.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DvDdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 43.3Mb sub-directories of 1Mb or more: data 43.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... NOTE prepare_Rd: DvDdata-package.Rd:35-37: Dropping empty section \seealso checkRd: (-1) DvDdata-package.Rd:25: Lost braces 25 | Maintainer: Julio Saez-Rodriguez{saezrodriguez@ebi.ac.uk} | ^ prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details prepare_Rd: genelist.Rd:14-16: Dropping empty section \source * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 43.1 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/DvDdata.Rcheck/00check.log’ for details.
DvDdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL DvDdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘DvDdata’ ... ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DvDdata)
DvDdata.Rcheck/DvDdata-Ex.timings
name | user | system | elapsed | |
DvDdata-package | 0.010 | 0.004 | 0.013 | |
GEOfactorvalues | 0.001 | 0.000 | 0.001 | |
annotationlist | 0.001 | 0.000 | 0.000 | |
cytodisease | 0.000 | 0.000 | 0.001 | |
cytodrug | 0.000 | 0.001 | 0.001 | |
diseaseClusters | 0.000 | 0.001 | 0.001 | |
diseaseRL | 0.000 | 0.001 | 0.000 | |
diseaselabels | 0.001 | 0.000 | 0.000 | |
drugClusters | 0.001 | 0.000 | 0.001 | |
drugRL | 0.000 | 0.000 | 0.001 | |
druglabels | 0.000 | 0.001 | 0.001 | |
genelist | 0.000 | 0.001 | 0.001 | |