Back to Build/check report for BioC 3.19 experimental data |
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This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 69/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
COPDSexualDimorphism.data 1.40.0 (landing page) J Fah Sathirapongsasuti
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the COPDSexualDimorphism.data package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: COPDSexualDimorphism.data |
Version: 1.40.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings COPDSexualDimorphism.data_1.40.0.tar.gz |
StartedAt: 2024-10-17 11:09:53 -0400 (Thu, 17 Oct 2024) |
EndedAt: 2024-10-17 11:10:59 -0400 (Thu, 17 Oct 2024) |
EllapsedTime: 65.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: COPDSexualDimorphism.data.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings COPDSexualDimorphism.data_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/COPDSexualDimorphism.data.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.5 LTS * using session charset: UTF-8 * checking for file ‘COPDSexualDimorphism.data/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘COPDSexualDimorphism.data’ version ‘1.40.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘COPDSexualDimorphism.data’ can be installed ... OK * checking installed package size ... NOTE installed size is 34.5Mb sub-directories of 1Mb or more: data 34.4Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... NOTE Invalid package aliases in Rd file 'COPDSexualDimorphism.data-package.Rd': ‘COPDSexualDimorphism-package’ * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress lgrc.eqtl.rda 1.3Mb 653Kb xz lgrc.expr.rda 11.0Mb 7.6Mb xz lgrc.genes.rda 640Kb 367Kb xz * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/COPDSexualDimorphism.data.Rcheck/00check.log’ for details.
COPDSexualDimorphism.data.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL COPDSexualDimorphism.data ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘COPDSexualDimorphism.data’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COPDSexualDimorphism.data)
COPDSexualDimorphism.data.Rcheck/COPDSexualDimorphism.data-Ex.timings
name | user | system | elapsed | |
COPDSexualDimorphism.data-package | 0.249 | 0.027 | 0.278 | |
lgrc.expr | 0.536 | 0.036 | 0.575 | |