Back to Workflows build report for BioC 3.18

This page was generated on 2024-04-16 14:00:10 -0400 (Tue, 16 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1/30HostnameOS / ArchINSTALLBUILD
annotation 1.26.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2024-04-16 10:45:01 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/annotation
git_branch: RELEASE_3_18
git_last_commit: 02f76c2
git_last_commit_date: 2023-10-24 08:46:25 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for annotation on palomino4


To the developers/maintainers of the annotation package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: annotation
Version: 1.26.0
Command: chmod a+r annotation -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data annotation
StartedAt: 2024-04-16 11:05:21 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 11:10:13 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 292.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r annotation -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data annotation
###
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* checking for file 'annotation/DESCRIPTION' ... OK
* preparing 'annotation':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Annotating_Genomic_Ranges.Rmd' using rmarkdown
--- finished re-building 'Annotating_Genomic_Ranges.Rmd'

--- re-building 'Annotation_Resources.Rmd' using rmarkdown

Quitting from lines  at lines 774-777 [unnamed-chunk-50] (Annotation_Resources.Rmd)
Error: processing vignette 'Annotation_Resources.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'head': Not Found (HTTP 404).
--- failed re-building 'Annotation_Resources.Rmd'

SUMMARY: processing the following file failed:
  'Annotation_Resources.Rmd'

Error: Vignette re-building failed.
Execution halted