Back to Build/check report for BioC 3.18 annotations |
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This page was generated on 2024-04-17 08:30:07 -0400 (Wed, 17 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4677 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 32/45 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
metaboliteIDmapping 0.99.10 (landing page) Sebastian Canzler
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the metaboliteIDmapping package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: metaboliteIDmapping |
Version: 0.99.10 |
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:metaboliteIDmapping.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings metaboliteIDmapping_0.99.10.tar.gz |
StartedAt: 2024-04-17 06:34:38 -0400 (Wed, 17 Apr 2024) |
EndedAt: 2024-04-17 06:42:06 -0400 (Wed, 17 Apr 2024) |
EllapsedTime: 447.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: metaboliteIDmapping.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:metaboliteIDmapping.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings metaboliteIDmapping_0.99.10.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-data-annotation/meat/metaboliteIDmapping.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘metaboliteIDmapping/DESCRIPTION’ ... OK * this is package ‘metaboliteIDmapping’ version ‘0.99.10’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘metaboliteIDmapping’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... NOTE loading from cache It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘metaboliteIDmapping.Rmd’ using ‘UTF-8’... OK OK * checking re-building of vignette outputs ... NOTE Error(s) in re-building vignettes: ... --- re-building ‘metaboliteIDmapping.Rmd’ using rmarkdown Error: processing vignette 'metaboliteIDmapping.Rmd' failed with diagnostics: there is no package called ‘BiocStyle’ --- failed re-building ‘metaboliteIDmapping.Rmd’ SUMMARY: processing the following file failed: ‘metaboliteIDmapping.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.18-data-annotation/meat/metaboliteIDmapping.Rcheck/00check.log’ for details.
metaboliteIDmapping.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL metaboliteIDmapping ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘metaboliteIDmapping’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location loading from cache ** testing if installed package can be loaded from final location loading from cache ** testing if installed package keeps a record of temporary installation path * DONE (metaboliteIDmapping)
metaboliteIDmapping.Rcheck/metaboliteIDmapping-Ex.timings
name | user | system | elapsed | |
metabolitesMapping | 0.044 | 0.000 | 0.045 | |