| Back to Build/check report for BioC 3.18 annotations |
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This page was generated on 2024-04-17 08:30:07 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4677 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 5/45 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| AHPathbankDbs 0.99.5 (landing page) Kozo Nishida
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | |||||||
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To the developers/maintainers of the AHPathbankDbs package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AHPathbankDbs |
| Version: 0.99.5 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:AHPathbankDbs.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings AHPathbankDbs_0.99.5.tar.gz |
| StartedAt: 2024-04-17 06:33:32 -0400 (Wed, 17 Apr 2024) |
| EndedAt: 2024-04-17 06:34:41 -0400 (Wed, 17 Apr 2024) |
| EllapsedTime: 68.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: AHPathbankDbs.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:AHPathbankDbs.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings AHPathbankDbs_0.99.5.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-annotation/meat/AHPathbankDbs.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘AHPathbankDbs/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AHPathbankDbs’ version ‘0.99.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AHPathbankDbs’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘creating-PathbankDbs.Rmd’ using ‘UTF-8’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
AHPathbankDbs.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL AHPathbankDbs ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘AHPathbankDbs’ ... ** using staged installation ** inst ** help No man pages found in package ‘AHPathbankDbs’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AHPathbankDbs)