Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-04-18 11:32:18 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1913/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SELEX 1.34.0 (landing page) Harmen J. Bussemaker
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the SELEX package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SELEX |
Version: 1.34.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SELEX_1.34.0.tar.gz |
StartedAt: 2024-04-18 03:27:38 -0400 (Thu, 18 Apr 2024) |
EndedAt: 2024-04-18 03:29:41 -0400 (Thu, 18 Apr 2024) |
EllapsedTime: 122.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SELEX.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SELEX_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/SELEX.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SELEX/DESCRIPTION’ ... OK * this is package ‘SELEX’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SELEX’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SELEX 16.360 2.027 9.259 selex.seqfilter 6.396 0.477 3.165 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
name | user | system | elapsed | |
SELEX | 16.360 | 2.027 | 9.259 | |
selex.affinities | 1.187 | 0.051 | 0.412 | |
selex.config | 0.171 | 0.010 | 0.075 | |
selex.countSummary | 1.076 | 0.049 | 0.367 | |
selex.counts | 1.402 | 0.051 | 0.572 | |
selex.defineSample | 0.200 | 0.010 | 0.061 | |
selex.exampledata | 0.146 | 0.008 | 0.045 | |
selex.fastqPSFM | 0.843 | 0.030 | 0.340 | |
selex.getAttributes | 0.180 | 0.012 | 0.076 | |
selex.getRound0 | 0.318 | 0.015 | 0.120 | |
selex.getSeqfilter | 0.068 | 0.004 | 0.029 | |
selex.infogain | 1.483 | 0.069 | 0.514 | |
selex.infogainSummary | 0.754 | 0.035 | 0.359 | |
selex.jvmStatus | 0.103 | 0.004 | 0.038 | |
selex.kmax | 1.170 | 0.352 | 0.992 | |
selex.kmerPSFM | 0.517 | 0.071 | 0.271 | |
selex.loadAnnotation | 0.297 | 0.014 | 0.124 | |
selex.mm | 0.355 | 0.026 | 0.255 | |
selex.mmProb | 0.244 | 0.020 | 0.171 | |
selex.mmSummary | 0.504 | 0.032 | 0.235 | |
selex.revcomp | 0.739 | 0.058 | 0.475 | |
selex.run | 1.073 | 0.055 | 0.440 | |
selex.sample | 0.206 | 0.011 | 0.081 | |
selex.samplePSFM | 0.596 | 0.023 | 0.223 | |
selex.sampleSummary | 0.166 | 0.008 | 0.074 | |
selex.saveAnnotation | 0.099 | 0.011 | 0.046 | |
selex.seqfilter | 6.396 | 0.477 | 3.165 | |
selex.setwd | 0.049 | 0.002 | 0.022 | |
selex.split | 0.279 | 0.015 | 0.150 | |
selex.summary | 0.594 | 0.041 | 0.440 | |