Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-04-18 11:32:11 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 974/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.8.0 (landing page) Matineh Rahmatbakhsh
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the HPiP package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.8.0.tar.gz |
StartedAt: 2024-04-17 16:31:08 -0400 (Wed, 17 Apr 2024) |
EndedAt: 2024-04-17 16:37:35 -0400 (Wed, 17 Apr 2024) |
EllapsedTime: 386.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/HPiP.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 54.664 2.296 57.112 FSmethod 53.491 2.132 55.901 corr_plot 51.751 2.440 54.534 pred_ensembel 16.317 0.389 13.827 enrichfindP 0.513 0.080 28.657 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 104.049264 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 100.487702 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.866829 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 111.079768 iter 10 value 91.261674 iter 20 value 90.821890 final value 90.821486 converged Fitting Repeat 5 # weights: 103 initial value 100.687990 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 103.264086 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 113.696761 final value 94.354396 converged Fitting Repeat 3 # weights: 305 initial value 114.283953 iter 10 value 94.484211 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 107.781539 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 102.050817 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 125.917983 final value 94.354396 converged Fitting Repeat 2 # weights: 507 initial value 95.365146 final value 94.484137 converged Fitting Repeat 3 # weights: 507 initial value 101.395673 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 111.819333 iter 10 value 94.354476 final value 94.354396 converged Fitting Repeat 5 # weights: 507 initial value 112.353168 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 98.630055 iter 10 value 94.456155 iter 20 value 88.886954 iter 30 value 86.813104 iter 40 value 86.241168 iter 50 value 86.083284 iter 60 value 86.082450 final value 86.082428 converged Fitting Repeat 2 # weights: 103 initial value 102.591118 iter 10 value 94.542628 iter 20 value 94.490689 iter 30 value 94.477634 iter 40 value 88.289082 iter 50 value 87.959666 iter 60 value 87.194084 iter 70 value 85.039024 iter 80 value 84.572191 iter 90 value 84.037322 iter 100 value 83.754617 final value 83.754617 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.459704 iter 10 value 94.501649 iter 20 value 89.699889 iter 30 value 86.933057 iter 40 value 86.413954 iter 50 value 86.238089 iter 60 value 86.206394 iter 60 value 86.206394 final value 86.206394 converged Fitting Repeat 4 # weights: 103 initial value 103.439480 iter 10 value 94.459641 iter 20 value 93.301448 iter 30 value 87.606533 iter 40 value 86.994352 iter 50 value 86.234548 iter 60 value 86.029046 iter 70 value 85.329288 iter 80 value 85.084147 iter 90 value 85.069967 final value 85.068001 converged Fitting Repeat 5 # weights: 103 initial value 102.508460 iter 10 value 94.024030 iter 20 value 90.016580 iter 30 value 86.521506 iter 40 value 85.062543 iter 50 value 84.902798 iter 60 value 84.734745 iter 70 value 84.247864 iter 80 value 83.961790 iter 90 value 83.597918 iter 100 value 83.446436 final value 83.446436 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 105.395888 iter 10 value 94.486808 iter 20 value 92.171980 iter 30 value 87.586003 iter 40 value 86.696617 iter 50 value 85.987242 iter 60 value 85.655338 iter 70 value 85.532161 iter 80 value 84.112911 iter 90 value 83.292447 iter 100 value 83.086115 final value 83.086115 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 112.387905 iter 10 value 93.996791 iter 20 value 89.426466 iter 30 value 89.001445 iter 40 value 83.786279 iter 50 value 83.485435 iter 60 value 83.129209 iter 70 value 82.587735 iter 80 value 82.434123 iter 90 value 82.394069 iter 100 value 82.348588 final value 82.348588 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.285719 iter 10 value 94.521611 iter 20 value 91.268630 iter 30 value 89.287521 iter 40 value 87.046446 iter 50 value 86.163638 iter 60 value 85.584452 iter 70 value 85.080419 iter 80 value 85.065083 iter 90 value 84.185558 iter 100 value 83.525219 final value 83.525219 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.292795 iter 10 value 94.461827 iter 20 value 91.063121 iter 30 value 87.878167 iter 40 value 86.444420 iter 50 value 82.941757 iter 60 value 82.125783 iter 70 value 81.994539 iter 80 value 81.797539 iter 90 value 81.758422 iter 100 value 81.755187 final value 81.755187 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.159357 iter 10 value 93.915355 iter 20 value 88.257781 iter 30 value 84.364408 iter 40 value 83.525101 iter 50 value 83.008450 iter 60 value 82.652174 iter 70 value 82.526826 iter 80 value 82.501107 iter 90 value 82.467061 iter 100 value 82.285751 final value 82.285751 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 117.859580 iter 10 value 94.662752 iter 20 value 90.951469 iter 30 value 86.687669 iter 40 value 86.616591 iter 50 value 85.340540 iter 60 value 84.653648 iter 70 value 83.599806 iter 80 value 83.347133 iter 90 value 82.959504 iter 100 value 82.639559 final value 82.639559 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 113.323281 iter 10 value 99.743430 iter 20 value 97.574453 iter 30 value 94.547643 iter 40 value 94.255897 iter 50 value 85.618582 iter 60 value 83.792098 iter 70 value 83.461683 iter 80 value 83.301761 iter 90 value 82.814876 iter 100 value 82.631858 final value 82.631858 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.894492 iter 10 value 93.596282 iter 20 value 86.823970 iter 30 value 85.701146 iter 40 value 85.178628 iter 50 value 84.783219 iter 60 value 84.257984 iter 70 value 84.008020 iter 80 value 83.356010 iter 90 value 82.724592 iter 100 value 82.668511 final value 82.668511 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.850674 iter 10 value 94.923375 iter 20 value 92.402144 iter 30 value 88.435828 iter 40 value 85.833936 iter 50 value 83.943457 iter 60 value 83.073175 iter 70 value 82.613848 iter 80 value 82.513120 iter 90 value 82.227474 iter 100 value 82.112141 final value 82.112141 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 121.336421 iter 10 value 94.873100 iter 20 value 94.331815 iter 30 value 87.305572 iter 40 value 86.190584 iter 50 value 86.101006 iter 60 value 86.030301 iter 70 value 84.887276 iter 80 value 83.022221 iter 90 value 82.515613 iter 100 value 82.412833 final value 82.412833 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.947956 final value 94.485832 converged Fitting Repeat 2 # weights: 103 initial value 101.250836 final value 94.048304 converged Fitting Repeat 3 # weights: 103 initial value 95.218066 final value 94.486002 converged Fitting Repeat 4 # weights: 103 initial value 111.659944 iter 10 value 94.485191 iter 20 value 93.785449 iter 30 value 93.277264 iter 40 value 86.561439 iter 50 value 85.988399 iter 60 value 85.988309 final value 85.988184 converged Fitting Repeat 5 # weights: 103 initial value 96.434140 final value 94.485806 converged Fitting Repeat 1 # weights: 305 initial value 98.063692 iter 10 value 94.489162 iter 20 value 94.460889 iter 30 value 94.354492 iter 30 value 94.354492 iter 30 value 94.354492 final value 94.354492 converged Fitting Repeat 2 # weights: 305 initial value 100.119672 iter 10 value 94.489229 iter 20 value 92.496163 iter 30 value 86.640220 iter 30 value 86.640219 iter 30 value 86.640219 final value 86.640219 converged Fitting Repeat 3 # weights: 305 initial value 122.477001 iter 10 value 94.359089 iter 20 value 94.355982 final value 94.355119 converged Fitting Repeat 4 # weights: 305 initial value 102.555462 iter 10 value 94.489210 iter 20 value 94.484215 iter 30 value 93.561462 iter 40 value 90.181361 iter 50 value 87.752546 iter 60 value 87.749210 iter 70 value 85.041414 iter 80 value 84.997023 iter 90 value 84.996796 iter 100 value 84.996448 final value 84.996448 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.963330 iter 10 value 93.786362 iter 20 value 93.783571 iter 30 value 93.781655 iter 40 value 88.041399 iter 50 value 84.804418 iter 60 value 81.501915 iter 70 value 81.412014 iter 80 value 81.382407 iter 90 value 81.380988 iter 100 value 81.380767 final value 81.380767 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 123.611334 iter 10 value 94.362697 iter 20 value 94.322238 iter 30 value 88.941130 iter 40 value 88.556102 iter 50 value 88.523512 iter 60 value 87.211998 iter 70 value 87.134844 iter 80 value 85.992303 iter 90 value 85.463762 iter 100 value 85.422231 final value 85.422231 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 128.188784 iter 10 value 94.362624 iter 20 value 94.354783 iter 30 value 88.240514 iter 40 value 86.150486 iter 50 value 85.992164 iter 60 value 85.010361 iter 70 value 84.946666 iter 80 value 84.103905 iter 90 value 83.934068 iter 100 value 83.657835 final value 83.657835 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.167188 iter 10 value 94.491992 iter 20 value 94.389731 iter 30 value 86.532044 iter 40 value 84.253036 iter 50 value 84.076553 iter 60 value 83.438672 iter 70 value 83.437983 iter 80 value 82.854925 iter 90 value 82.713047 iter 100 value 82.697942 final value 82.697942 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.025831 iter 10 value 94.361967 iter 20 value 94.353595 iter 30 value 94.179145 iter 40 value 91.658415 iter 50 value 86.802887 iter 60 value 86.284128 iter 70 value 85.946393 iter 80 value 85.875928 iter 90 value 85.353259 iter 100 value 84.344162 final value 84.344162 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 116.764385 iter 10 value 91.698958 iter 20 value 86.766154 iter 30 value 86.688122 iter 40 value 86.684175 iter 50 value 86.680700 iter 60 value 85.836730 iter 70 value 85.817730 iter 80 value 85.815564 iter 90 value 85.656274 final value 85.654508 converged Fitting Repeat 1 # weights: 103 initial value 96.284153 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 95.666173 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 105.809909 final value 94.354396 converged Fitting Repeat 4 # weights: 103 initial value 118.636458 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 105.969472 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 105.274723 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 111.691118 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 102.888689 iter 10 value 94.290491 iter 20 value 83.262952 iter 30 value 83.240200 iter 40 value 83.239538 final value 83.239527 converged Fitting Repeat 4 # weights: 305 initial value 105.116439 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 95.289349 iter 10 value 94.135765 final value 94.132578 converged Fitting Repeat 1 # weights: 507 initial value 104.721554 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 109.597862 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 99.937972 iter 10 value 94.452050 iter 20 value 85.810036 iter 30 value 82.323212 iter 40 value 82.311723 final value 82.311690 converged Fitting Repeat 4 # weights: 507 initial value 95.922320 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 139.909360 iter 10 value 94.919511 final value 94.354396 converged Fitting Repeat 1 # weights: 103 initial value 114.537180 iter 10 value 94.406046 iter 20 value 86.314276 iter 30 value 85.323278 iter 40 value 84.100137 iter 50 value 83.866720 iter 60 value 83.119273 iter 70 value 83.072927 final value 83.072923 converged Fitting Repeat 2 # weights: 103 initial value 96.737752 iter 10 value 94.368060 iter 20 value 91.984500 iter 30 value 90.418650 iter 40 value 87.770901 iter 50 value 83.374210 iter 60 value 80.683066 iter 70 value 79.504112 iter 80 value 79.119994 iter 90 value 78.968977 iter 100 value 78.876991 final value 78.876991 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 100.939850 iter 10 value 94.478913 iter 20 value 88.434350 iter 30 value 87.607356 iter 40 value 85.685861 iter 50 value 82.423445 iter 60 value 81.892098 iter 70 value 81.606069 iter 80 value 81.582514 final value 81.582489 converged Fitting Repeat 4 # weights: 103 initial value 103.325751 iter 10 value 94.488251 iter 20 value 94.401224 iter 30 value 84.477180 iter 40 value 83.540575 iter 50 value 82.893703 iter 60 value 81.798017 iter 70 value 81.597106 final value 81.582546 converged Fitting Repeat 5 # weights: 103 initial value 96.527801 iter 10 value 93.321074 iter 20 value 83.596962 iter 30 value 82.626961 iter 40 value 82.404552 iter 50 value 82.341770 iter 60 value 81.836100 iter 70 value 81.327156 final value 81.313727 converged Fitting Repeat 1 # weights: 305 initial value 109.009766 iter 10 value 94.260305 iter 20 value 86.151724 iter 30 value 82.227096 iter 40 value 81.606186 iter 50 value 81.381001 iter 60 value 80.681575 iter 70 value 79.748969 iter 80 value 78.113733 iter 90 value 77.787286 iter 100 value 77.725665 final value 77.725665 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 119.327769 iter 10 value 87.716654 iter 20 value 85.458762 iter 30 value 84.635988 iter 40 value 82.068084 iter 50 value 81.744379 iter 60 value 81.465520 iter 70 value 78.870817 iter 80 value 78.048275 iter 90 value 77.452946 iter 100 value 77.064477 final value 77.064477 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.905855 iter 10 value 93.351719 iter 20 value 86.432441 iter 30 value 83.578180 iter 40 value 82.762315 iter 50 value 81.211512 iter 60 value 81.166792 iter 70 value 80.614234 iter 80 value 77.884719 iter 90 value 77.579449 iter 100 value 77.436217 final value 77.436217 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.600958 iter 10 value 86.834487 iter 20 value 79.991733 iter 30 value 78.455834 iter 40 value 77.849172 iter 50 value 77.287007 iter 60 value 76.659352 iter 70 value 76.612136 iter 80 value 76.554764 iter 90 value 76.529603 iter 100 value 76.500298 final value 76.500298 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 113.836639 iter 10 value 94.202154 iter 20 value 88.811329 iter 30 value 85.209012 iter 40 value 82.839026 iter 50 value 80.015338 iter 60 value 79.474501 iter 70 value 79.221143 iter 80 value 78.360234 iter 90 value 77.606424 iter 100 value 77.534002 final value 77.534002 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 101.221329 iter 10 value 92.689251 iter 20 value 83.693278 iter 30 value 83.503325 iter 40 value 83.264579 iter 50 value 80.032348 iter 60 value 78.372825 iter 70 value 77.734081 iter 80 value 77.337666 iter 90 value 77.236725 iter 100 value 76.736000 final value 76.736000 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.451065 iter 10 value 87.844157 iter 20 value 85.033312 iter 30 value 85.002695 iter 40 value 84.529784 iter 50 value 82.023667 iter 60 value 80.677660 iter 70 value 80.195945 iter 80 value 79.499895 iter 90 value 79.121943 iter 100 value 78.798763 final value 78.798763 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 119.514794 iter 10 value 94.463088 iter 20 value 86.745211 iter 30 value 82.583371 iter 40 value 80.809408 iter 50 value 79.248907 iter 60 value 78.526199 iter 70 value 78.269293 iter 80 value 77.900599 iter 90 value 77.572807 iter 100 value 77.487751 final value 77.487751 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 139.582360 iter 10 value 94.544118 iter 20 value 87.727477 iter 30 value 84.363589 iter 40 value 82.528569 iter 50 value 81.652347 iter 60 value 81.342012 iter 70 value 79.987810 iter 80 value 79.435765 iter 90 value 78.530135 iter 100 value 77.676461 final value 77.676461 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.248784 iter 10 value 96.425834 iter 20 value 87.884402 iter 30 value 83.531630 iter 40 value 79.686704 iter 50 value 78.854668 iter 60 value 78.363942 iter 70 value 78.158877 iter 80 value 77.246786 iter 90 value 76.816229 iter 100 value 76.734775 final value 76.734775 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.984526 final value 94.485871 converged Fitting Repeat 2 # weights: 103 initial value 107.342799 final value 94.485927 converged Fitting Repeat 3 # weights: 103 initial value 98.778181 final value 94.485759 converged Fitting Repeat 4 # weights: 103 initial value 95.988401 final value 94.485791 converged Fitting Repeat 5 # weights: 103 initial value 107.915866 final value 94.485903 converged Fitting Repeat 1 # weights: 305 initial value 112.977614 iter 10 value 94.491750 iter 20 value 94.486438 final value 94.486419 converged Fitting Repeat 2 # weights: 305 initial value 100.596929 iter 10 value 94.488748 iter 20 value 94.088528 iter 30 value 83.905687 iter 40 value 83.899618 iter 50 value 83.898366 iter 60 value 83.897235 iter 70 value 83.895258 iter 80 value 83.885261 iter 90 value 83.882695 iter 100 value 83.258103 final value 83.258103 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.175448 iter 10 value 94.359492 iter 20 value 94.354923 final value 94.354522 converged Fitting Repeat 4 # weights: 305 initial value 96.211066 iter 10 value 94.151886 iter 20 value 94.140175 iter 30 value 94.135625 iter 40 value 94.134866 iter 50 value 94.133025 final value 94.133020 converged Fitting Repeat 5 # weights: 305 initial value 100.580083 iter 10 value 93.115712 iter 20 value 93.055083 iter 30 value 81.240341 iter 40 value 80.273309 iter 50 value 80.262499 iter 60 value 80.262126 iter 70 value 80.249146 iter 80 value 78.598921 iter 90 value 77.323761 iter 100 value 77.309083 final value 77.309083 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 96.005057 iter 10 value 94.362811 iter 20 value 94.356151 final value 94.355363 converged Fitting Repeat 2 # weights: 507 initial value 107.381569 iter 10 value 94.491678 iter 20 value 92.787407 iter 30 value 92.453651 iter 40 value 91.318519 iter 50 value 91.271748 iter 60 value 91.270046 final value 91.270028 converged Fitting Repeat 3 # weights: 507 initial value 99.263834 iter 10 value 93.405798 iter 20 value 86.230995 iter 30 value 82.433683 iter 40 value 82.335778 iter 50 value 82.297761 iter 60 value 82.296022 iter 70 value 82.295876 iter 80 value 82.126562 iter 90 value 81.605344 iter 100 value 81.547412 final value 81.547412 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 94.720047 iter 10 value 94.488848 iter 20 value 94.075391 iter 30 value 93.016238 iter 40 value 93.015464 iter 50 value 93.015242 iter 60 value 93.015198 final value 93.015122 converged Fitting Repeat 5 # weights: 507 initial value 104.829564 iter 10 value 94.167739 iter 20 value 94.146316 iter 30 value 94.144940 iter 40 value 93.952392 iter 50 value 83.518192 iter 60 value 83.243137 iter 70 value 83.237469 iter 80 value 83.217102 iter 90 value 82.881937 iter 100 value 79.162045 final value 79.162045 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.080473 final value 94.043243 converged Fitting Repeat 2 # weights: 103 initial value 100.147837 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 101.300570 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 103.370123 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 98.570054 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 102.480216 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 99.749563 iter 10 value 93.284198 final value 93.279878 converged Fitting Repeat 3 # weights: 305 initial value 102.075936 final value 94.043243 converged Fitting Repeat 4 # weights: 305 initial value 98.289539 iter 10 value 93.328420 final value 93.328261 converged Fitting Repeat 5 # weights: 305 initial value 95.233444 final value 94.042012 converged Fitting Repeat 1 # weights: 507 initial value 100.196806 final value 94.043243 converged Fitting Repeat 2 # weights: 507 initial value 96.721789 final value 94.011428 converged Fitting Repeat 3 # weights: 507 initial value 117.831526 final value 94.043243 converged Fitting Repeat 4 # weights: 507 initial value 117.288884 iter 10 value 89.993719 iter 20 value 86.344482 iter 20 value 86.344482 iter 20 value 86.344482 final value 86.344482 converged Fitting Repeat 5 # weights: 507 initial value 116.638513 iter 10 value 93.328261 iter 10 value 93.328261 iter 10 value 93.328261 final value 93.328261 converged Fitting Repeat 1 # weights: 103 initial value 100.184550 iter 10 value 94.045309 iter 20 value 84.113387 iter 30 value 83.263567 iter 40 value 83.011913 iter 50 value 82.818681 iter 60 value 82.675928 iter 70 value 82.624499 final value 82.622871 converged Fitting Repeat 2 # weights: 103 initial value 106.298596 iter 10 value 94.062553 iter 20 value 93.591757 iter 30 value 92.770503 iter 40 value 89.886458 iter 50 value 83.954446 iter 60 value 82.404655 iter 70 value 82.294627 iter 80 value 82.160255 iter 90 value 81.221471 iter 100 value 80.949295 final value 80.949295 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 95.609341 iter 10 value 94.052364 iter 20 value 93.870641 iter 30 value 90.604189 iter 40 value 88.729432 iter 50 value 85.536113 iter 60 value 85.017264 iter 70 value 82.285062 iter 80 value 81.553858 iter 90 value 81.505335 iter 100 value 81.225388 final value 81.225388 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 101.591333 iter 10 value 94.057324 iter 20 value 94.021558 iter 30 value 93.441791 iter 40 value 93.197088 iter 50 value 93.107405 iter 60 value 85.384492 iter 70 value 83.960323 iter 80 value 83.261756 iter 90 value 83.121561 iter 100 value 82.276610 final value 82.276610 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 105.169442 iter 10 value 94.059603 iter 20 value 94.035833 iter 30 value 93.685828 iter 40 value 89.785022 iter 50 value 84.696543 iter 60 value 83.123700 iter 70 value 83.053881 iter 80 value 82.638327 iter 90 value 82.622881 final value 82.622875 converged Fitting Repeat 1 # weights: 305 initial value 98.983926 iter 10 value 94.015124 iter 20 value 93.744201 iter 30 value 87.476193 iter 40 value 86.022178 iter 50 value 85.579704 iter 60 value 83.206069 iter 70 value 80.880291 iter 80 value 80.388931 iter 90 value 80.182259 iter 100 value 80.040814 final value 80.040814 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.458646 iter 10 value 93.915447 iter 20 value 93.313243 iter 30 value 92.985146 iter 40 value 84.818051 iter 50 value 83.885146 iter 60 value 83.447988 iter 70 value 81.504522 iter 80 value 81.064355 iter 90 value 80.149719 iter 100 value 80.039459 final value 80.039459 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.073530 iter 10 value 91.131574 iter 20 value 87.044481 iter 30 value 84.840353 iter 40 value 83.976144 iter 50 value 82.594042 iter 60 value 82.294779 iter 70 value 82.001761 iter 80 value 81.630079 iter 90 value 81.518318 iter 100 value 81.516866 final value 81.516866 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 114.762860 iter 10 value 94.329118 iter 20 value 92.309204 iter 30 value 90.357273 iter 40 value 87.526992 iter 50 value 86.133226 iter 60 value 85.279752 iter 70 value 83.585101 iter 80 value 81.214445 iter 90 value 79.988285 iter 100 value 79.414045 final value 79.414045 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.759233 iter 10 value 93.681807 iter 20 value 87.191303 iter 30 value 85.728608 iter 40 value 84.241218 iter 50 value 82.209634 iter 60 value 81.936661 iter 70 value 81.622965 iter 80 value 81.292721 iter 90 value 81.038310 iter 100 value 80.478547 final value 80.478547 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.322655 iter 10 value 96.253980 iter 20 value 94.106487 iter 30 value 94.042794 iter 40 value 92.509935 iter 50 value 87.678024 iter 60 value 86.254297 iter 70 value 86.206361 iter 80 value 85.922111 iter 90 value 85.741465 iter 100 value 85.038043 final value 85.038043 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.210586 iter 10 value 94.730973 iter 20 value 93.628902 iter 30 value 87.252224 iter 40 value 86.202406 iter 50 value 85.496147 iter 60 value 84.414020 iter 70 value 81.496227 iter 80 value 80.682967 iter 90 value 80.452424 iter 100 value 79.959245 final value 79.959245 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 140.695295 iter 10 value 94.186715 iter 20 value 89.567612 iter 30 value 84.621554 iter 40 value 83.490090 iter 50 value 81.618740 iter 60 value 81.019418 iter 70 value 80.294637 iter 80 value 80.081141 iter 90 value 79.893534 iter 100 value 79.811675 final value 79.811675 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.887408 iter 10 value 96.557235 iter 20 value 95.431849 iter 30 value 89.846345 iter 40 value 85.850554 iter 50 value 85.199686 iter 60 value 84.727038 iter 70 value 82.108837 iter 80 value 81.092150 iter 90 value 80.692962 iter 100 value 80.639094 final value 80.639094 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.587250 iter 10 value 94.075179 iter 20 value 93.850030 iter 30 value 90.702887 iter 40 value 85.297093 iter 50 value 83.328338 iter 60 value 82.754723 iter 70 value 81.003274 iter 80 value 80.691282 iter 90 value 80.439715 iter 100 value 80.114418 final value 80.114418 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.192156 final value 94.054348 converged Fitting Repeat 2 # weights: 103 initial value 101.243524 final value 94.054490 converged Fitting Repeat 3 # weights: 103 initial value 100.012921 final value 94.054635 converged Fitting Repeat 4 # weights: 103 initial value 94.875402 final value 94.054761 converged Fitting Repeat 5 # weights: 103 initial value 101.385524 final value 94.054898 converged Fitting Repeat 1 # weights: 305 initial value 101.915234 iter 10 value 94.057834 iter 20 value 94.053354 iter 30 value 93.603919 iter 40 value 93.387104 iter 50 value 93.256898 iter 60 value 92.933801 iter 70 value 89.917119 iter 80 value 89.369984 iter 90 value 88.676917 iter 100 value 88.199464 final value 88.199464 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.396266 iter 10 value 94.057581 iter 20 value 94.052903 iter 30 value 94.043362 final value 94.043275 converged Fitting Repeat 3 # weights: 305 initial value 96.025384 iter 10 value 92.055944 iter 20 value 82.997562 iter 30 value 82.981153 iter 40 value 82.979187 iter 50 value 82.977187 iter 60 value 81.567361 iter 70 value 81.162169 iter 80 value 81.161317 iter 90 value 80.686902 iter 100 value 79.279017 final value 79.279017 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.954029 iter 10 value 94.054286 iter 20 value 94.052970 iter 30 value 93.488174 iter 40 value 93.283940 iter 50 value 86.809836 iter 60 value 84.022651 iter 70 value 82.982907 final value 82.972160 converged Fitting Repeat 5 # weights: 305 initial value 104.831605 iter 10 value 93.802510 iter 20 value 93.684479 iter 30 value 93.640446 iter 40 value 93.621122 iter 50 value 87.777649 iter 60 value 85.457654 iter 70 value 82.953704 iter 80 value 81.350696 iter 90 value 81.299849 iter 100 value 81.150872 final value 81.150872 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 95.178062 iter 10 value 94.060096 iter 20 value 85.370417 iter 30 value 85.088175 iter 40 value 84.981649 iter 50 value 84.522611 iter 60 value 82.891515 iter 70 value 82.873576 iter 80 value 82.434892 iter 90 value 82.062994 iter 100 value 82.048528 final value 82.048528 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 96.113813 iter 10 value 93.253789 iter 20 value 93.005312 iter 30 value 92.757341 iter 40 value 92.754779 iter 50 value 92.754292 iter 60 value 91.364766 iter 70 value 91.064949 iter 80 value 91.064413 iter 90 value 90.926300 iter 100 value 90.599408 final value 90.599408 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 101.512627 iter 10 value 94.025322 iter 20 value 94.024610 iter 30 value 94.022028 iter 40 value 87.865596 iter 50 value 84.679572 iter 60 value 82.646582 iter 70 value 81.180236 iter 80 value 80.349575 iter 90 value 80.008344 iter 100 value 79.867417 final value 79.867417 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 96.141585 iter 10 value 94.060822 iter 20 value 94.022091 iter 30 value 92.242712 iter 40 value 91.690124 iter 50 value 91.688706 iter 60 value 87.275644 iter 70 value 87.218430 iter 80 value 86.591765 iter 90 value 86.122331 iter 100 value 85.868614 final value 85.868614 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 100.987941 iter 10 value 94.061412 iter 20 value 93.913921 iter 30 value 87.451214 iter 40 value 84.936297 final value 84.934535 converged Fitting Repeat 1 # weights: 103 initial value 100.125736 iter 10 value 93.659814 final value 93.578672 converged Fitting Repeat 2 # weights: 103 initial value 94.396360 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 103.812929 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 104.953505 iter 10 value 93.533314 iter 20 value 93.421827 final value 93.421697 converged Fitting Repeat 5 # weights: 103 initial value 96.656995 final value 94.008696 converged Fitting Repeat 1 # weights: 305 initial value 104.707056 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 108.609772 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 95.139034 final value 94.008696 converged Fitting Repeat 4 # weights: 305 initial value 115.974931 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 97.112821 iter 10 value 93.266611 final value 93.224692 converged Fitting Repeat 1 # weights: 507 initial value 96.383047 final value 93.636782 converged Fitting Repeat 2 # weights: 507 initial value 97.018806 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 132.853864 iter 10 value 94.008696 iter 10 value 94.008696 iter 10 value 94.008696 final value 94.008696 converged Fitting Repeat 4 # weights: 507 initial value 116.407602 final value 94.000449 converged Fitting Repeat 5 # weights: 507 initial value 102.772864 final value 94.008696 converged Fitting Repeat 1 # weights: 103 initial value 100.787608 iter 10 value 93.981804 iter 20 value 83.911012 iter 30 value 83.234998 iter 40 value 83.156997 iter 50 value 81.831880 iter 60 value 80.733983 iter 70 value 80.466139 iter 80 value 80.371115 iter 90 value 80.308344 final value 80.305501 converged Fitting Repeat 2 # weights: 103 initial value 111.764999 iter 10 value 94.055070 iter 20 value 84.884025 iter 30 value 84.016772 iter 40 value 83.845646 iter 50 value 82.849247 iter 60 value 82.251095 final value 82.250103 converged Fitting Repeat 3 # weights: 103 initial value 99.587829 iter 10 value 94.054980 iter 20 value 93.360721 iter 30 value 88.593746 iter 40 value 84.286007 iter 50 value 83.497995 iter 60 value 82.791017 iter 70 value 82.319859 iter 80 value 82.252746 iter 90 value 82.250103 iter 90 value 82.250102 iter 90 value 82.250102 final value 82.250102 converged Fitting Repeat 4 # weights: 103 initial value 97.167458 iter 10 value 94.058463 iter 20 value 94.054809 iter 30 value 89.225819 iter 40 value 85.960579 iter 50 value 83.128966 iter 60 value 82.354099 iter 70 value 82.255480 iter 80 value 82.227682 final value 82.227278 converged Fitting Repeat 5 # weights: 103 initial value 109.044452 iter 10 value 93.983237 iter 20 value 87.940890 iter 30 value 83.902463 iter 40 value 83.051946 iter 50 value 81.738290 iter 60 value 80.518322 iter 70 value 80.454303 iter 80 value 80.432329 iter 90 value 80.336256 iter 100 value 80.305504 final value 80.305504 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 117.101687 iter 10 value 92.567297 iter 20 value 83.972348 iter 30 value 83.890470 iter 40 value 83.274258 iter 50 value 81.841439 iter 60 value 80.703017 iter 70 value 80.352407 iter 80 value 80.199172 iter 90 value 80.130797 iter 100 value 80.093180 final value 80.093180 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.162274 iter 10 value 92.134484 iter 20 value 85.581500 iter 30 value 85.070318 iter 40 value 83.028446 iter 50 value 82.297675 iter 60 value 81.340023 iter 70 value 80.801583 iter 80 value 80.109468 iter 90 value 79.916850 iter 100 value 79.549005 final value 79.549005 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.048818 iter 10 value 94.164942 iter 20 value 94.069891 iter 30 value 93.960063 iter 40 value 91.346728 iter 50 value 84.415193 iter 60 value 82.471562 iter 70 value 81.894684 iter 80 value 79.895978 iter 90 value 79.363527 iter 100 value 79.120427 final value 79.120427 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.485079 iter 10 value 92.673367 iter 20 value 87.679534 iter 30 value 85.646382 iter 40 value 82.897931 iter 50 value 81.019671 iter 60 value 79.831575 iter 70 value 79.676670 iter 80 value 79.647726 iter 90 value 79.616209 iter 100 value 79.575549 final value 79.575549 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 116.719110 iter 10 value 93.958422 iter 20 value 87.056299 iter 30 value 86.375803 iter 40 value 84.318483 iter 50 value 82.318373 iter 60 value 82.155882 iter 70 value 82.080911 iter 80 value 81.646879 iter 90 value 81.309704 iter 100 value 81.210206 final value 81.210206 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 120.116483 iter 10 value 95.947777 iter 20 value 93.789226 iter 30 value 83.948626 iter 40 value 80.765479 iter 50 value 79.892643 iter 60 value 79.471519 iter 70 value 78.900795 iter 80 value 78.728647 iter 90 value 78.486775 iter 100 value 78.434675 final value 78.434675 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 119.691812 iter 10 value 93.979239 iter 20 value 87.220539 iter 30 value 84.712964 iter 40 value 82.866428 iter 50 value 82.581171 iter 60 value 81.775353 iter 70 value 81.401301 iter 80 value 81.225762 iter 90 value 81.192217 iter 100 value 81.022239 final value 81.022239 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 150.505091 iter 10 value 95.063289 iter 20 value 84.244417 iter 30 value 82.370331 iter 40 value 82.169987 iter 50 value 80.864771 iter 60 value 80.537264 iter 70 value 80.366112 iter 80 value 80.224056 iter 90 value 79.506108 iter 100 value 79.289391 final value 79.289391 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 119.038966 iter 10 value 89.899336 iter 20 value 84.312464 iter 30 value 83.276599 iter 40 value 82.645596 iter 50 value 82.014245 iter 60 value 81.870096 iter 70 value 81.628549 iter 80 value 80.225986 iter 90 value 79.660469 iter 100 value 79.309311 final value 79.309311 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 112.235632 iter 10 value 93.767177 iter 20 value 93.626078 iter 30 value 91.541381 iter 40 value 87.089919 iter 50 value 85.502093 iter 60 value 82.672552 iter 70 value 81.165607 iter 80 value 80.263044 iter 90 value 79.374047 iter 100 value 79.106736 final value 79.106736 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.195294 iter 10 value 94.054548 iter 20 value 94.051160 iter 30 value 93.518175 final value 93.518148 converged Fitting Repeat 2 # weights: 103 initial value 100.863602 final value 94.054516 converged Fitting Repeat 3 # weights: 103 initial value 97.827293 final value 94.054613 converged Fitting Repeat 4 # weights: 103 initial value 99.658108 final value 94.054741 converged Fitting Repeat 5 # weights: 103 initial value 105.615729 final value 94.054648 converged Fitting Repeat 1 # weights: 305 initial value 117.445715 iter 10 value 94.059562 iter 20 value 94.054721 iter 30 value 84.376607 iter 40 value 83.300999 iter 50 value 83.096898 final value 83.096564 converged Fitting Repeat 2 # weights: 305 initial value 98.538674 iter 10 value 94.057755 iter 20 value 94.052974 iter 30 value 93.978476 iter 40 value 93.519861 iter 50 value 93.518077 iter 50 value 93.518077 iter 50 value 93.518077 final value 93.518077 converged Fitting Repeat 3 # weights: 305 initial value 109.167275 iter 10 value 93.677364 iter 20 value 92.074385 iter 30 value 92.036208 iter 40 value 91.752090 iter 50 value 91.736817 final value 91.735281 converged Fitting Repeat 4 # weights: 305 initial value 113.943235 iter 10 value 94.057868 iter 20 value 93.998395 iter 30 value 83.301422 final value 83.296979 converged Fitting Repeat 5 # weights: 305 initial value 94.321148 iter 10 value 93.877608 iter 20 value 93.875173 iter 30 value 93.869776 iter 40 value 93.868873 iter 50 value 88.040200 iter 60 value 88.008537 iter 70 value 84.672352 iter 80 value 84.590473 iter 90 value 84.570269 iter 100 value 84.563494 final value 84.563494 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 114.346401 iter 10 value 94.059722 iter 20 value 94.012318 iter 30 value 93.536940 iter 40 value 91.740018 iter 50 value 82.176675 iter 60 value 81.471106 final value 81.460605 converged Fitting Repeat 2 # weights: 507 initial value 116.819799 iter 10 value 94.061820 iter 20 value 94.053094 iter 30 value 83.734713 iter 40 value 80.995136 iter 50 value 80.898785 iter 60 value 80.892781 iter 70 value 80.885239 iter 80 value 80.878393 iter 90 value 80.855204 iter 100 value 80.718773 final value 80.718773 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 98.795193 iter 10 value 94.056976 final value 94.053572 converged Fitting Repeat 4 # weights: 507 initial value 98.626642 iter 10 value 87.247042 iter 20 value 87.241960 iter 30 value 87.163475 iter 40 value 85.153335 iter 50 value 85.088006 iter 60 value 85.087626 iter 70 value 83.035822 iter 80 value 82.874933 iter 90 value 80.519546 iter 100 value 79.280377 final value 79.280377 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 98.841760 iter 10 value 87.156820 iter 20 value 86.326933 iter 30 value 84.330487 iter 40 value 82.642620 iter 50 value 80.777651 iter 60 value 80.338868 final value 80.332580 converged Fitting Repeat 1 # weights: 103 initial value 108.765666 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 95.795300 iter 10 value 94.026546 final value 94.026542 converged Fitting Repeat 3 # weights: 103 initial value 99.156384 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 110.411413 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.684647 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 100.066495 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 123.025427 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 121.550549 final value 94.026542 converged Fitting Repeat 4 # weights: 305 initial value 98.886285 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 96.721166 iter 10 value 94.026556 final value 94.026542 converged Fitting Repeat 1 # weights: 507 initial value 117.154614 iter 10 value 93.581769 final value 93.581395 converged Fitting Repeat 2 # weights: 507 initial value 95.595580 final value 93.047059 converged Fitting Repeat 3 # weights: 507 initial value 104.237453 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 99.961758 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 99.732247 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 99.702450 iter 10 value 93.508160 iter 20 value 89.296563 iter 30 value 87.082426 iter 40 value 85.418110 iter 50 value 84.544107 iter 60 value 84.342139 iter 70 value 84.262746 final value 84.248079 converged Fitting Repeat 2 # weights: 103 initial value 98.467294 iter 10 value 94.458760 iter 20 value 93.998118 iter 30 value 93.887435 iter 40 value 88.049697 iter 50 value 86.833247 iter 60 value 85.986005 iter 70 value 84.438409 iter 80 value 84.179911 final value 84.178164 converged Fitting Repeat 3 # weights: 103 initial value 105.191652 iter 10 value 94.444825 iter 20 value 90.911862 iter 30 value 88.245960 iter 40 value 87.991098 iter 50 value 87.768987 iter 60 value 87.523813 final value 87.523170 converged Fitting Repeat 4 # weights: 103 initial value 96.247611 iter 10 value 94.435814 iter 20 value 93.903437 iter 30 value 93.741409 iter 40 value 87.504767 iter 50 value 87.031028 iter 60 value 85.605472 iter 70 value 85.264566 final value 85.260084 converged Fitting Repeat 5 # weights: 103 initial value 98.820068 iter 10 value 94.549704 iter 20 value 91.198013 iter 30 value 87.500096 iter 40 value 87.230626 iter 50 value 86.708456 iter 60 value 85.584727 iter 70 value 85.319215 iter 80 value 85.260127 final value 85.260084 converged Fitting Repeat 1 # weights: 305 initial value 112.167305 iter 10 value 94.389980 iter 20 value 93.701304 iter 30 value 88.047319 iter 40 value 87.296352 iter 50 value 85.387944 iter 60 value 84.989485 iter 70 value 84.434704 iter 80 value 84.320108 iter 90 value 84.132676 iter 100 value 83.586520 final value 83.586520 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.687578 iter 10 value 93.945915 iter 20 value 92.284184 iter 30 value 87.233175 iter 40 value 86.797311 iter 50 value 85.871227 iter 60 value 84.435305 iter 70 value 84.215071 iter 80 value 84.070827 iter 90 value 83.946007 iter 100 value 83.796739 final value 83.796739 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.474218 iter 10 value 94.604484 iter 20 value 94.138714 iter 30 value 94.115128 iter 40 value 93.841517 iter 50 value 91.300094 iter 60 value 90.698407 iter 70 value 89.894732 iter 80 value 86.585030 iter 90 value 84.760655 iter 100 value 84.007121 final value 84.007121 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.937311 iter 10 value 94.903201 iter 20 value 94.323426 iter 30 value 94.090521 iter 40 value 89.177013 iter 50 value 88.054563 iter 60 value 87.582940 iter 70 value 86.752429 iter 80 value 85.380483 iter 90 value 84.128268 iter 100 value 84.012410 final value 84.012410 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.635324 iter 10 value 94.779152 iter 20 value 92.068938 iter 30 value 89.010087 iter 40 value 88.591917 iter 50 value 87.531896 iter 60 value 87.442129 iter 70 value 87.379027 iter 80 value 86.595519 iter 90 value 85.322936 iter 100 value 84.364011 final value 84.364011 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 131.205576 iter 10 value 94.643073 iter 20 value 94.034342 iter 30 value 88.716284 iter 40 value 87.706223 iter 50 value 86.643354 iter 60 value 84.549116 iter 70 value 84.285286 iter 80 value 84.007638 iter 90 value 83.611419 iter 100 value 83.505023 final value 83.505023 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 120.900191 iter 10 value 94.440157 iter 20 value 91.195355 iter 30 value 87.526683 iter 40 value 86.585270 iter 50 value 85.756197 iter 60 value 85.118659 iter 70 value 84.971080 iter 80 value 84.639190 iter 90 value 83.945632 iter 100 value 83.808752 final value 83.808752 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.276452 iter 10 value 95.363023 iter 20 value 93.188416 iter 30 value 87.234840 iter 40 value 85.671295 iter 50 value 84.710326 iter 60 value 84.437013 iter 70 value 84.190660 iter 80 value 84.032901 iter 90 value 83.963477 iter 100 value 83.892847 final value 83.892847 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 111.432901 iter 10 value 97.350423 iter 20 value 91.927879 iter 30 value 88.937165 iter 40 value 87.432188 iter 50 value 87.174784 iter 60 value 87.121539 iter 70 value 86.972015 iter 80 value 85.851672 iter 90 value 84.759849 iter 100 value 84.107530 final value 84.107530 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.657921 iter 10 value 92.166166 iter 20 value 87.860570 iter 30 value 87.197539 iter 40 value 86.474871 iter 50 value 85.834236 iter 60 value 85.072138 iter 70 value 84.252824 iter 80 value 83.888501 iter 90 value 83.692679 iter 100 value 83.531349 final value 83.531349 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.968992 final value 94.486072 converged Fitting Repeat 2 # weights: 103 initial value 99.820017 final value 94.485915 converged Fitting Repeat 3 # weights: 103 initial value 106.621068 final value 94.485623 converged Fitting Repeat 4 # weights: 103 initial value 95.283090 final value 94.485705 converged Fitting Repeat 5 # weights: 103 initial value 97.669779 iter 10 value 94.485807 iter 20 value 94.470027 iter 30 value 87.391099 final value 87.334264 converged Fitting Repeat 1 # weights: 305 initial value 111.678488 iter 10 value 94.489273 iter 20 value 94.480400 iter 30 value 93.980294 final value 93.976431 converged Fitting Repeat 2 # weights: 305 initial value 102.348793 iter 10 value 94.489334 iter 20 value 94.484255 iter 30 value 93.991056 final value 93.976414 converged Fitting Repeat 3 # weights: 305 initial value 101.744748 iter 10 value 94.488562 iter 20 value 93.680914 iter 30 value 93.152846 iter 40 value 93.150120 iter 50 value 93.147535 iter 60 value 92.729153 iter 70 value 92.564043 iter 80 value 92.549464 iter 90 value 91.698122 iter 100 value 91.019392 final value 91.019392 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.740138 iter 10 value 93.551793 iter 20 value 93.548738 iter 30 value 92.093761 iter 40 value 89.060124 iter 50 value 88.987231 iter 60 value 88.258619 iter 70 value 86.552009 iter 80 value 84.493883 iter 90 value 84.390264 iter 100 value 84.192128 final value 84.192128 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 96.928505 iter 10 value 88.800437 iter 20 value 88.760028 iter 30 value 88.633873 iter 40 value 88.630985 final value 88.630916 converged Fitting Repeat 1 # weights: 507 initial value 95.727280 iter 10 value 94.492202 iter 20 value 94.455388 iter 30 value 89.752974 iter 40 value 89.398690 iter 50 value 87.256426 iter 60 value 87.112802 iter 70 value 86.911162 iter 80 value 86.810239 iter 90 value 86.807585 iter 100 value 86.804837 final value 86.804837 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 95.080698 iter 10 value 94.034593 iter 20 value 94.029099 iter 30 value 91.529271 iter 40 value 88.384036 iter 50 value 88.223622 iter 60 value 88.218270 iter 70 value 88.217725 iter 80 value 88.215816 iter 90 value 88.048997 iter 100 value 86.687383 final value 86.687383 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 112.733246 iter 10 value 94.491951 iter 20 value 94.478162 iter 30 value 94.028570 iter 40 value 94.028281 final value 94.028120 converged Fitting Repeat 4 # weights: 507 initial value 96.497646 iter 10 value 94.490605 iter 20 value 94.434586 iter 30 value 88.654453 iter 40 value 88.014908 iter 50 value 86.669575 iter 60 value 85.640421 iter 70 value 85.617880 iter 80 value 85.617466 iter 90 value 84.781885 iter 100 value 84.508037 final value 84.508037 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 98.090389 iter 10 value 94.457249 iter 20 value 94.431853 iter 30 value 92.117451 iter 40 value 86.506017 iter 50 value 85.799490 iter 60 value 85.610781 iter 70 value 83.393069 iter 80 value 83.100700 iter 90 value 83.099491 iter 100 value 82.920230 final value 82.920230 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 135.737373 iter 10 value 117.612927 iter 20 value 108.693033 iter 30 value 103.776189 iter 40 value 102.998839 iter 50 value 101.981664 iter 60 value 101.844239 iter 70 value 101.676279 iter 80 value 101.466168 iter 90 value 101.175813 iter 100 value 100.954722 final value 100.954722 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 123.463415 iter 10 value 117.936835 iter 20 value 116.872980 iter 30 value 112.742371 iter 40 value 112.322616 iter 50 value 108.615074 iter 60 value 107.270997 iter 70 value 106.057797 iter 80 value 105.649325 iter 90 value 105.233993 iter 100 value 104.656722 final value 104.656722 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 142.491803 iter 10 value 117.689344 iter 20 value 110.377908 iter 30 value 109.156429 iter 40 value 108.502449 iter 50 value 106.384254 iter 60 value 105.147365 iter 70 value 105.040680 iter 80 value 104.770022 iter 90 value 102.636010 iter 100 value 101.103957 final value 101.103957 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 141.266980 iter 10 value 118.216770 iter 20 value 110.096772 iter 30 value 104.397938 iter 40 value 103.096532 iter 50 value 102.472685 iter 60 value 102.325791 iter 70 value 102.315354 iter 80 value 102.117057 iter 90 value 102.112619 iter 100 value 102.106831 final value 102.106831 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 127.743434 iter 10 value 117.927768 iter 20 value 116.983318 iter 30 value 109.549819 iter 40 value 108.241325 iter 50 value 105.193554 iter 60 value 104.952790 iter 70 value 104.812673 iter 80 value 104.662131 iter 90 value 104.007151 iter 100 value 102.398940 final value 102.398940 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Wed Apr 17 16:37:24 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 45.834 1.193 67.807
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 53.491 | 2.132 | 55.901 | |
FreqInteractors | 0.271 | 0.012 | 0.294 | |
calculateAAC | 0.052 | 0.007 | 0.060 | |
calculateAutocor | 0.410 | 0.057 | 0.471 | |
calculateCTDC | 0.093 | 0.006 | 0.099 | |
calculateCTDD | 0.591 | 0.030 | 0.621 | |
calculateCTDT | 0.252 | 0.016 | 0.268 | |
calculateCTriad | 0.430 | 0.028 | 0.459 | |
calculateDC | 0.095 | 0.012 | 0.106 | |
calculateF | 0.282 | 0.012 | 0.295 | |
calculateKSAAP | 0.097 | 0.010 | 0.106 | |
calculateQD_Sm | 1.937 | 0.147 | 2.086 | |
calculateTC | 1.688 | 0.160 | 1.850 | |
calculateTC_Sm | 0.322 | 0.029 | 0.350 | |
corr_plot | 51.751 | 2.440 | 54.534 | |
enrichfindP | 0.513 | 0.080 | 28.657 | |
enrichfind_hp | 0.071 | 0.014 | 0.952 | |
enrichplot | 0.371 | 0.009 | 0.379 | |
filter_missing_values | 0.001 | 0.000 | 0.001 | |
getFASTA | 0.091 | 0.013 | 2.239 | |
getHPI | 0.000 | 0.000 | 0.001 | |
get_negativePPI | 0.001 | 0.000 | 0.002 | |
get_positivePPI | 0.000 | 0.000 | 0.001 | |
impute_missing_data | 0.002 | 0.001 | 0.002 | |
plotPPI | 0.079 | 0.003 | 0.082 | |
pred_ensembel | 16.317 | 0.389 | 13.827 | |
var_imp | 54.664 | 2.296 | 57.112 | |