Back to Workflows build report for BioC 3.17

This page was generated on 2023-10-13 14:00:09 -0400 (Fri, 13 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 28/30HostnameOS / ArchINSTALLBUILD
spicyWorkflow 1.0.1  (landing page)
SOMS Maintainer
Snapshot Date: 2023-10-13 07:45:02 -0400 (Fri, 13 Oct 2023)
git_url: https://git.bioconductor.org/packages/spicyWorkflow
git_branch: RELEASE_3_17
git_last_commit: 6d9b124
git_last_commit_date: 2023-04-25 20:05:41 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  

BUILD results for spicyWorkflow on nebbiolo1


To the developers/maintainers of the spicyWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: spicyWorkflow
Version: 1.0.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
StartedAt: 2023-10-13 08:04:33 -0400 (Fri, 13 Oct 2023)
EndedAt: 2023-10-13 08:51:42 -0400 (Fri, 13 Oct 2023)
EllapsedTime: 2828.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
###
##############################################################################
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* checking for file ‘spicyWorkflow/DESCRIPTION’ ... OK
* preparing ‘spicyWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘spicyWorkflow.Rmd’ using rmarkdown

Quitting from lines 442-455 [unnamed-chunk-13] (spicyWorkflow.Rmd)
Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 54
  4 unevaluated and other errors
  first remote error:
Error in cut.default(p$d, Rs, labels = Rs[-1], include.lowest = TRUE): invalid number of intervals

--- failed re-building ‘spicyWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘spicyWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted