| Back to Workflows build report for BioC 3.17 |
This page was generated on 2023-10-13 14:00:09 -0400 (Fri, 13 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 29/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| TCGAWorkflow 1.24.1 (landing page) Tiago Chedraoui Silva
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK |  | |||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | |||||||||
|
To the developers/maintainers of the TCGAWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TCGAWorkflow |
| Version: 1.24.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL TCGAWorkflow |
| StartedAt: 2023-10-13 08:00:15 -0400 (Fri, 13 Oct 2023) |
| EndedAt: 2023-10-13 08:01:20 -0400 (Fri, 13 Oct 2023) |
| EllapsedTime: 64.9 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL TCGAWorkflow ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘TCGAWorkflow’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'TCGAWorkflow' Warning: replacing previous import 'ggpubr::mutate' by 'plyr::mutate' when loading 'TCGAWorkflow' Warning: replacing previous import 'ChIPseeker::.' by 'plyr::.' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'TCGAWorkflow' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'TCGAWorkflow' Warning: replacing previous import 'ggpubr::mutate' by 'plyr::mutate' when loading 'TCGAWorkflow' Warning: replacing previous import 'ChIPseeker::.' by 'plyr::.' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'TCGAWorkflow' ** testing if installed package can be loaded from final location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::rename' by 'plyr::rename' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::count' by 'plyr::count' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::failwith' by 'plyr::failwith' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::id' by 'plyr::id' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::summarize' by 'plyr::summarize' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::summarise' by 'plyr::summarise' when loading 'TCGAWorkflow' Warning: replacing previous import 'ggpubr::mutate' by 'plyr::mutate' when loading 'TCGAWorkflow' Warning: replacing previous import 'ChIPseeker::.' by 'plyr::.' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::desc' by 'plyr::desc' when loading 'TCGAWorkflow' Warning: replacing previous import 'dplyr::arrange' by 'plyr::arrange' when loading 'TCGAWorkflow' ** testing if installed package keeps a record of temporary installation path * DONE (TCGAWorkflow)