Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:10 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1757/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ropls 1.32.0 (landing page) Etienne A. Thevenot
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | TIMEOUT | OK | ||||||||
To the developers/maintainers of the ropls package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ropls |
Version: 1.32.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ropls_1.32.0.tar.gz |
StartedAt: 2023-10-18 20:20:25 -0400 (Wed, 18 Oct 2023) |
EndedAt: 2023-10-18 21:00:25 -0400 (Wed, 18 Oct 2023) |
EllapsedTime: 2400.7 seconds |
RetCode: None |
Status: TIMEOUT |
CheckDir: ropls.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ropls_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/ropls.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.6.7 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ropls/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ropls’ version ‘1.32.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ropls’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .gg_scoreplot: no visible binding for global variable ‘.comp1’ .gg_scoreplot: no visible binding for global variable ‘.comp2’ Undefined global functions or variables: .comp1 .comp2 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ...
ropls.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ropls ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘ropls’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ropls)
ropls.Rcheck/ropls-Ex.timings
name | user | system | elapsed | |
checkW4M | 0.169 | 0.009 | 0.260 | |
coef | 1.172 | 0.038 | 1.771 | |
fitted | 0.870 | 0.027 | 1.131 | |
fromW4M | 0.137 | 0.005 | 0.168 | |
getEset | 0.702 | 0.026 | 0.887 | |
getLoadingMN | 0.686 | 0.028 | 0.751 | |
getMset | 0.39 | 0.01 | 0.41 | |
getOpls | 0.996 | 0.029 | 1.154 | |
getPcaVarVn | 0.096 | 0.004 | 0.102 | |
getScoreMN | 0.716 | 0.024 | 0.939 | |
getSubsetVi | 0.070 | 0.005 | 0.111 | |
getSummaryDF | 0.714 | 0.021 | 1.061 | |
getVipVn | 1.088 | 0.034 | 1.412 | |
getWeightMN | 0.617 | 0.032 | 0.824 | |
gg_scoreplot | 4.474 | 0.288 | 6.327 | |