Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-03-30 11:00:37 -0400 (Thu, 30 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson2 | macOS 12.6.1 Monterey | arm64 | R Under development (unstable) (2023-03-17 r83997) -- "Unsuffered Consequences" | 4168 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the mbOmic package: Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1122/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mbOmic 1.3.0 (landing page) Congcong Gong
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | NA | ||||||||
Package: mbOmic |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mbOmic.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mbOmic_1.3.0.tar.gz |
StartedAt: 2023-03-29 11:41:24 -0400 (Wed, 29 Mar 2023) |
EndedAt: 2023-03-29 11:45:25 -0400 (Wed, 29 Mar 2023) |
EllapsedTime: 241.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mbOmic.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mbOmic.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mbOmic_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/mbOmic.Rcheck’ * using R Under development (unstable) (2023-03-17 r83997) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 13.0.0 (clang-1300.0.29.3) GNU Fortran (GCC) 12.0.1 20220312 (experimental) * running under: macOS Monterey 12.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mbOmic/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mbOmic’ version ‘1.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mbOmic’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed coExpress 10.234 0.193 13.004 plot_network 9.646 0.217 12.828 plot_coExpress 6.506 0.052 8.270 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
mbOmic.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mbOmic ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘mbOmic’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘nrow’ from package ‘base’ in package ‘mbOmic’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘mbOmic’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mbOmic)
mbOmic.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-03-17 r83997) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(mbOmic) > > test_check("mbOmic") [ FAIL 0 | WARN 1 | SKIP 0 | PASS 1 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 1 ] > > proc.time() user system elapsed 7.511 0.436 10.406
mbOmic.Rcheck/mbOmic-Ex.timings
name | user | system | elapsed | |
Set-class | 0 | 0 | 0 | |
bSet-class | 0.015 | 0.002 | 0.017 | |
bSet | 0.003 | 0.001 | 0.004 | |
clean_analytes | 0.028 | 0.002 | 0.033 | |
cluster_jsd | 0.010 | 0.002 | 0.012 | |
coExpress | 10.234 | 0.193 | 13.004 | |
corr | 2.821 | 0.231 | 3.184 | |
dist_jsd | 0.003 | 0.001 | 0.004 | |
enterotyping | 0.046 | 0.006 | 3.692 | |
estimate_k | 0.119 | 0.021 | 0.154 | |
features | 0.023 | 0.004 | 0.028 | |
mSet-class | 0.003 | 0.001 | 0.004 | |
mSet | 0.004 | 0.001 | 0.006 | |
plot_coExpress | 6.506 | 0.052 | 8.270 | |
plot_network | 9.646 | 0.217 | 12.828 | |
print.verCHI | 0.023 | 0.002 | 0.033 | |
samples | 0.023 | 0.005 | 0.035 | |
vmh-class | 0.002 | 0.001 | 0.006 | |