Pierre Khoueiry
| Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/fcScan |
| git_branch: RELEASE_3_17 |
| git_last_commit: 76e3033 |
| git_last_commit_date: 2023-04-25 11:11:44 -0400 (Tue, 25 Apr 2023) |
| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:02 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 689/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.14.0 (landing page) Pierre Khoueiry
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the fcScan package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: fcScan |
| Version: 1.14.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.14.0.tar.gz |
| StartedAt: 2023-10-17 19:19:19 -0400 (Tue, 17 Oct 2023) |
| EndedAt: 2023-10-17 19:26:56 -0400 (Tue, 17 Oct 2023) |
| EllapsedTime: 457.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.14.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/fcScan.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘fcScan’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.4564948 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 0.1649771 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.17471 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1756942 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.193028 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.168638 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1864741 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.167506 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1578281 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.135071 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1535251 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1455929 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1350842 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.139771 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.161572 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.17535 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 0.1402872 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1498399 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1512978 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1479189 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1430318 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1468761 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1625431 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.172173 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1542318 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1777921 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.163691 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1388152 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1535859 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.308203 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1938019 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.2053461 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.229229 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1687908 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.2027559 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.210408 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1688702 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1793489 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1499801 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1866271 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.136975 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.2010708 secs
RUNIT TEST PROTOCOL -- Tue Oct 17 19:26:42 2023
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
19.275 1.101 31.757
fcScan.Rcheck/fcScan-Ex.timings
| name | user | system | elapsed | |
| getCluster | 0.329 | 0.022 | 0.560 | |