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This page was generated on 2023-10-20 09:37:58 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 66/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
annmap 1.42.0  (landing page)
Chris Wirth
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/annmap
git_branch: RELEASE_3_17
git_last_commit: b4cafd1
git_last_commit_date: 2023-04-25 10:23:14 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

BUILD BIN results for annmap on kjohnson2


To the developers/maintainers of the annmap package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: annmap
Version: 1.42.0
Command: rm -rf annmap.buildbin-libdir && mkdir annmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh annmap_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R annmap.buildbin-libdir
StartedAt: 2023-10-19 11:12:32 -0400 (Thu, 19 Oct 2023)
EndedAt: 2023-10-19 11:13:40 -0400 (Thu, 19 Oct 2023)
EllapsedTime: 67.9 seconds
RetCode: 0
Status:   OK  
PackageFile: annmap_1.42.0.tgz
PackageFileSize: 1.285 MiB

Command output

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###
### Running command:
###
###   rm -rf annmap.buildbin-libdir && mkdir annmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh annmap_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R annmap.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=annmap.buildbin-libdir annmap_1.42.0.tar.gz'
>>>>>>> 

* installing *source* package ‘annmap’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘probesetInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘probeInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘proteinInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘domainInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘geneInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘transcriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘exonInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estGeneInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estTranscriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estExonInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘predictionTranscriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (annmap)