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This page was generated on 2023-10-20 09:38:12 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
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Package 1907/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIAMCAT 2.4.0  (landing page)
Jakob Wirbel
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/SIAMCAT
git_branch: RELEASE_3_17
git_last_commit: 026eb87
git_last_commit_date: 2023-04-25 11:02:01 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for SIAMCAT on kjohnson2


To the developers/maintainers of the SIAMCAT package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SIAMCAT
Version: 2.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT
StartedAt: 2023-10-16 20:21:52 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 20:24:15 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 143.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT
###
##############################################################################
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* checking for file ‘SIAMCAT/DESCRIPTION’ ... OK
* preparing ‘SIAMCAT’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SIAMCAT_confounder.Rmd’ using rmarkdown

Quitting from lines 160-179 [load_motus] (SIAMCAT_confounder.Rmd)
Error: processing vignette 'SIAMCAT_confounder.Rmd' failed with diagnostics:
HTTP error 403.
--- failed re-building ‘SIAMCAT_confounder.Rmd’

--- re-building ‘SIAMCAT_holdout.Rmd’ using rmarkdown

Quitting from lines 55-69 [siamcat_fr] (SIAMCAT_holdout.Rmd)
Error: processing vignette 'SIAMCAT_holdout.Rmd' failed with diagnostics:
cannot open the connection to 'https://zenodo.org/api/files/d81e429c-870f-44e0-a44a-2a4aa541b6c1/specI_Zeller.tsv'
--- failed re-building ‘SIAMCAT_holdout.Rmd’

--- re-building ‘SIAMCAT_meta.Rmd’ using rmarkdown

Quitting from lines 49-62 [load_data] (SIAMCAT_meta.Rmd)
Error: processing vignette 'SIAMCAT_meta.Rmd' failed with diagnostics:
HTTP error 403.
--- failed re-building ‘SIAMCAT_meta.Rmd’

--- re-building ‘SIAMCAT_ml_pitfalls.Rmd’ using rmarkdown

Quitting from lines 341-350 [load_data_ibd] (SIAMCAT_ml_pitfalls.Rmd)
Error: processing vignette 'SIAMCAT_ml_pitfalls.Rmd' failed with diagnostics:
HTTP error 403.
--- failed re-building ‘SIAMCAT_ml_pitfalls.Rmd’

--- re-building ‘SIAMCAT_read-in.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_read-in.Rmd’

--- re-building ‘SIAMCAT_vignette.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘SIAMCAT_confounder.Rmd’ ‘SIAMCAT_holdout.Rmd’ ‘SIAMCAT_meta.Rmd’
  ‘SIAMCAT_ml_pitfalls.Rmd’

Error: Vignette re-building failed.
Execution halted