Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:09 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1522/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PING 2.44.0 (landing page) Renan Sauteraud
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | WARNINGS | OK | ||||||||
To the developers/maintainers of the PING package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: PING |
Version: 2.44.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PING |
StartedAt: 2023-10-15 19:52:43 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 19:54:38 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 114.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PING ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘PING’ ... ** using staged installation checking for pkg-config... /opt/homebrew/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... no checking for gcc... clang -arch arm64 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ISO C89... none needed checking for gsl-config... /opt/R/arm64/bin/gsl-config checking for GSL - version >= 1.6... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ping.c -o ping.o ping.c:321:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if(abs(REAL(yF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha) ^ ping.c:321:10: note: use function 'fabs' instead if(abs(REAL(yF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha) ^~~ fabs ping.c:329:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if(abs(REAL(yR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha) ^ ping.c:329:10: note: use function 'fabs' instead if(abs(REAL(yR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha) ^~~ fabs ping.c:345:12: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if(abs(REAL(cF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha) ^ ping.c:345:12: note: use function 'fabs' instead if(abs(REAL(cF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])<calpha) ^~~ fabs ping.c:353:12: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if(abs(REAL(cR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha) ^ ping.c:353:12: note: use function 'fabs' instead if(abs(REAL(cR)[i]-mu[k]-delta[k]/2.)/sqrt(sR[k])<calpha) ^~~ fabs ping.c:1536:9: warning: variable 'chiSum' set but not used [-Wunused-but-set-variable] double chiSum = 0, etaF, etaR, dd, cc; ^ ping.c:3280:20: warning: variable 'tstatMax' set but not used [-Wunused-but-set-variable] double tstat=0.0,tstatMax=0.0; ^ 6 warnings generated. clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o PING.so init.o ping.o -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-PING/00new/PING/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PING)