Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-03-16 11:02:07 -0400 (Thu, 16 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson2 | macOS 12.6.1 Monterey | arm64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4115 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the PFP package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1475/2189 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PFP 1.7.0 (landing page) XC Zhang
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
Package: PFP |
Version: 1.7.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PFP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PFP_1.7.0.tar.gz |
StartedAt: 2023-03-14 09:35:35 -0400 (Tue, 14 Mar 2023) |
EndedAt: 2023-03-14 09:37:13 -0400 (Tue, 14 Mar 2023) |
EllapsedTime: 97.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PFP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PFP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PFP_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/PFP.Rcheck’ * using R Under development (unstable) (2023-01-10 r83596) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 13.0.0 (clang-1300.0.29.3) GNU Fortran (GCC) 12.0.1 20220312 (experimental) * running under: macOS Monterey 12.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PFP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PFP’ version ‘1.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PFP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PFP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PFP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘PFP’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PFP)
PFP.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(PFP) > test_check('PFP') [ FAIL 0 | WARN 6 | SKIP 0 | PASS 31 ] [ FAIL 0 | WARN 6 | SKIP 0 | PASS 31 ] > > proc.time() user system elapsed 3.794 0.152 3.941
PFP.Rcheck/PFP-Ex.timings
name | user | system | elapsed | |
PFP-class | 0.039 | 0.014 | 0.053 | |
PFPRefnet-class | 0.256 | 0.018 | 0.274 | |
PFPRefnet_hsa | 0.172 | 0.003 | 0.175 | |
PFPRefnet_mmu | 0.265 | 0.002 | 0.267 | |
PFP_score-methods | 0.003 | 0.001 | 0.003 | |
PFP_test1 | 0.002 | 0.000 | 0.003 | |
PFP_test2 | 0.002 | 0.001 | 0.002 | |
calc_PFP_score | 4.124 | 0.052 | 4.177 | |
data_std | 0.005 | 0.000 | 0.007 | |
gene_list_hsa | 0.001 | 0.001 | 0.001 | |
genes_score-methods | 0.002 | 0.000 | 0.003 | |
get_PFPRefnet | 0 | 0 | 0 | |
get_asso_net | 1.093 | 0.023 | 1.117 | |
get_bg_related_kegg | 0.592 | 0.019 | 0.610 | |
get_exp_cor_edges | 0.068 | 0.004 | 0.072 | |
get_pathway_info | 0.044 | 0.002 | 1.434 | |
group-methods | 0.194 | 0.000 | 0.195 | |
kegg_download | 0 | 0 | 0 | |
net_info-methods | 0.177 | 0.000 | 0.178 | |
net_names-methods | 0.174 | 0.001 | 0.175 | |
network-methods | 0.174 | 0.002 | 0.176 | |
pathway_info | 0.001 | 0.000 | 0.002 | |
pathway_info_hsa | 0.001 | 0.000 | 0.001 | |
pathways_score-methods | 0.002 | 0.000 | 0.002 | |
plot_PFP-methods | 0.113 | 0.003 | 0.115 | |
plot_PFPlist | 0.073 | 0.001 | 0.074 | |
rank_PFP-methods | 0.039 | 0.013 | 0.053 | |
refnet_info-methods | 0.003 | 0.001 | 0.003 | |
refnet_names-methods | 0.002 | 0.000 | 0.003 | |
result_PFP-methods | 0.002 | 0.000 | 0.003 | |
show_PFP-methods | 0.003 | 0.002 | 0.004 | |
show_net-methods | 0.181 | 0.001 | 0.182 | |
stats_test-methods | 0.002 | 0.000 | 0.003 | |
sub_PFP-methods | 0.037 | 0.013 | 0.051 | |
subnet-methods | 0.180 | 0.000 | 0.181 | |
trans_edges_id | 0.670 | 0.009 | 0.679 | |
trans_graph2PFPRefnet | 0.250 | 0.017 | 0.267 | |
trans_xml2graph | 0.001 | 0.000 | 0.000 | |