Back to Mac ARM64 build report for BioC 3.17
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This page was generated on 2023-10-20 09:38:07 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1383/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NeuCA 1.6.0  (landing page)
Hao Feng
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/NeuCA
git_branch: RELEASE_3_17
git_last_commit: 2c090f2
git_last_commit_date: 2023-04-25 11:31:18 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for NeuCA on kjohnson2


To the developers/maintainers of the NeuCA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: NeuCA
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NeuCA
StartedAt: 2023-10-16 12:21:35 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 12:24:04 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 149.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NeuCA
###
##############################################################################
##############################################################################


* checking for file ‘NeuCA/DESCRIPTION’ ... OK
* preparing ‘NeuCA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘NeuCA.Rmd’ using rmarkdown

Quitting from lines 76-80 [unnamed-chunk-4] (NeuCA.Rmd)
Error: processing vignette 'NeuCA.Rmd' failed with diagnostics:
Valid installation of TensorFlow not found.

Python environments searched for 'tensorflow' package:
 /usr/bin/python3

Python exception encountered:
 Traceback (most recent call last):
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/__init__.py", line 52, in <module>
    from ._api.v2 import compat
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/__init__.py", line 37, in <module>
    from . import v1
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v1/__init__.py", line 31, in <module>
    from . import compat
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v1/compat/__init__.py", line 38, in <module>
    from . import v2
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v1/compat/v2/__init__.py", line 28, in <module>
    from tensorflow._api.v2.compat.v2 import __internal__
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v2/__init__.py", line 33, in <module>
    from . import compat
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v2/compat/__init__.py", line 38, in <module>
    from . import v2
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v2/compat/v2/__init__.py", line 37, in <module>
    from tensorflow._api.v2.compat.v2 import distribute
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v2/distribute/__init__.py", line 182, in <module>
    from . import experimental
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v2/distribute/experimental/__init__.py", line 10, in <module>
    from . import rpc
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/tensorflow/_api/v2/compat/v2/distribute/experimental/rpc/__init__.py", line 8, in <module>
    from tensorflow.python.distribute.experimental.rpc.rpc_ops import Client
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/Library/Frameworks/R.framework/Versions/
--- failed re-building ‘NeuCA.Rmd’

SUMMARY: processing the following file failed:
  ‘NeuCA.Rmd’

Error: Vignette re-building failed.
Execution halted