Daniil Wiebe
| Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/FoldGO |
| git_branch: RELEASE_3_17 |
| git_last_commit: 56bdeab |
| git_last_commit_date: 2023-04-25 11:04:26 -0400 (Tue, 25 Apr 2023) |
| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:02 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 738/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| FoldGO 1.18.0 (landing page) Daniil Wiebe
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | WARNINGS | OK | | |||||||
|
To the developers/maintainers of the FoldGO package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: FoldGO |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:FoldGO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings FoldGO_1.18.0.tar.gz |
| StartedAt: 2023-10-17 20:18:41 -0400 (Tue, 17 Oct 2023) |
| EndedAt: 2023-10-17 20:22:46 -0400 (Tue, 17 Oct 2023) |
| EllapsedTime: 244.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: FoldGO.Rcheck |
| Warnings: 1 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:FoldGO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings FoldGO_1.18.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/FoldGO.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FoldGO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FoldGO’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FoldGO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) fagroupstopgo_class.Rd:16: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:17: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:18-19: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:20-21: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:22: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:23: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:25: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:26-27: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:28-29: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:30-31: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:32-33: \item in \describe must have non-empty label
checkRd: (5) fagroupstopgo_class.Rd:42: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:21: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:22: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:23: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:24-25: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:26-27: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:35: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:36: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:37: \item in \describe must have non-empty label
checkRd: (5) foldspectest_class.Rd:38: \item in \describe must have non-empty label
checkRd: (5) gafreader_class.Rd:19: \item in \describe must have non-empty label
checkRd: (5) gafreader_class.Rd:20: \item in \describe must have non-empty label
checkRd: (5) gafreader_class.Rd:28: \item in \describe must have non-empty label
checkRd: (5) gafreader_class.Rd:29: \item in \describe must have non-empty label
checkRd: (5) gafreader_class.Rd:37-38: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:24-25: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:26: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:27: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:35-36: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:37-38: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:39: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:40: \item in \describe must have non-empty label
checkRd: (5) genegroups_class.Rd:41: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fagroupstopgo_class 6.218 0.192 9.443
plot-FoldSpecTest-ANY-method 5.412 0.071 7.960
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/FoldGO.Rcheck/00check.log’
for details.
FoldGO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL FoldGO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘FoldGO’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for ‘getAnnotation’ with signature ‘"MgsaSets"’: no definition for class “MgsaSets” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FoldGO)
FoldGO.Rcheck/FoldGO-Ex.timings
| name | user | system | elapsed | |
| examdata_bg | 0.002 | 0.001 | 0.003 | |
| examdata_degs | 0.001 | 0.001 | 0.003 | |
| examdata_objs | 0.001 | 0.002 | 0.007 | |
| fagroupstopgo_class | 6.218 | 0.192 | 9.443 | |
| foldspectest_class | 3.040 | 0.075 | 4.662 | |
| gafreader_class | 2.776 | 0.629 | 4.988 | |
| genegroups_class | 0.028 | 0.040 | 0.105 | |
| getAnnotation | 0.000 | 0.001 | 0.001 | |
| getWholeIntName | 2.888 | 0.048 | 4.484 | |
| plot-FoldSpecTest-ANY-method | 5.412 | 0.071 | 7.960 | |