Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the tweeDEseqCountData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 401/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
tweeDEseqCountData 1.36.0 (landing page) Juan R Gonzalez
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: tweeDEseqCountData |
Version: 1.36.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings tweeDEseqCountData_1.36.0.tar.gz |
StartedAt: 2023-04-11 12:26:57 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 12:27:23 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 26.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: tweeDEseqCountData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings tweeDEseqCountData_1.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/tweeDEseqCountData.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘tweeDEseqCountData/DESCRIPTION’ ... OK * this is package ‘tweeDEseqCountData’ version ‘1.36.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tweeDEseqCountData’ can be installed ... OK * checking installed package size ... NOTE installed size is 41.3Mb sub-directories of 1Mb or more: data 41.2Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘Biobase’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE NB: .First.lib is obsolete and will not be used in R >= 3.0.0 .First.lib: no visible global function definition for ‘.path.package’ Undefined global functions or variables: .path.package * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log’ for details.
tweeDEseqCountData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL tweeDEseqCountData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘tweeDEseqCountData’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tweeDEseqCountData)
tweeDEseqCountData.Rcheck/tweeDEseqCountData-Ex.timings
name | user | system | elapsed | |
annotEnsembl63 | 0.284 | 0.016 | 0.300 | |
cheung | 0.168 | 0.012 | 0.180 | |
commonPickrell1Huang | 0.609 | 0.028 | 0.637 | |
genderGenes | 0.000 | 0.001 | 0.001 | |
hkGenes | 0.000 | 0.001 | 0.002 | |
montgomery | 0.169 | 0.012 | 0.181 | |
pickrell | 0.272 | 0.048 | 0.320 | |