Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the optimalFlowData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 270/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
optimalFlowData 1.10.0 (landing page) Hristo Inouzhe
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: optimalFlowData |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings optimalFlowData_1.10.0.tar.gz |
StartedAt: 2023-04-11 12:07:55 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 12:08:49 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 54.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: optimalFlowData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings optimalFlowData_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/optimalFlowData.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘optimalFlowData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘optimalFlowData’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘optimalFlowData’ can be installed ... OK * checking installed package size ... NOTE installed size is 101.0Mb sub-directories of 1Mb or more: data 100.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 100.8 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘optimalFlowData_vignette.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/optimalFlowData.Rcheck/00check.log’ for details.
optimalFlowData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL optimalFlowData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘optimalFlowData’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optimalFlowData)
optimalFlowData.Rcheck/optimalFlowData-Ex.timings
name | user | system | elapsed | |
Cytometry1 | 0.023 | 0.016 | 0.039 | |
Cytometry10 | 0.016 | 0.016 | 0.032 | |
Cytometry11 | 0.029 | 0.004 | 0.032 | |
Cytometry12 | 0.024 | 0.008 | 0.032 | |
Cytometry13 | 0.024 | 0.012 | 0.036 | |
Cytometry14 | 0.023 | 0.023 | 0.046 | |
Cytometry15 | 0.013 | 0.005 | 0.017 | |
Cytometry16 | 0.014 | 0.003 | 0.017 | |
Cytometry17 | 0.069 | 0.004 | 0.073 | |
Cytometry18 | 0.048 | 0.016 | 0.065 | |
Cytometry19 | 0.027 | 0.003 | 0.030 | |
Cytometry2 | 0.051 | 0.008 | 0.059 | |
Cytometry20 | 0.045 | 0.004 | 0.049 | |
Cytometry21 | 0.059 | 0.004 | 0.062 | |
Cytometry22 | 0.029 | 0.000 | 0.029 | |
Cytometry23 | 0.024 | 0.000 | 0.024 | |
Cytometry24 | 0.027 | 0.001 | 0.026 | |
Cytometry25 | 0.025 | 0.000 | 0.024 | |
Cytometry26 | 0.026 | 0.000 | 0.026 | |
Cytometry27 | 0.072 | 0.007 | 0.079 | |
Cytometry28 | 0.064 | 0.020 | 0.084 | |
Cytometry29 | 0.078 | 0.009 | 0.086 | |
Cytometry3 | 0.016 | 0.000 | 0.016 | |
Cytometry30 | 0.062 | 0.011 | 0.074 | |
Cytometry31 | 0.055 | 0.004 | 0.059 | |
Cytometry32 | 0.064 | 0.000 | 0.064 | |
Cytometry33 | 0.034 | 0.001 | 0.034 | |
Cytometry34 | 0.103 | 0.004 | 0.107 | |
Cytometry35 | 0.052 | 0.000 | 0.052 | |
Cytometry36 | 0.016 | 0.000 | 0.015 | |
Cytometry37 | 0.010 | 0.003 | 0.014 | |
Cytometry38 | 0.013 | 0.001 | 0.014 | |
Cytometry39 | 0.014 | 0.000 | 0.014 | |
Cytometry4 | 0.016 | 0.000 | 0.016 | |
Cytometry40 | 0.037 | 0.000 | 0.037 | |
Cytometry5 | 0.016 | 0.000 | 0.016 | |
Cytometry6 | 0.014 | 0.000 | 0.015 | |
Cytometry7 | 0.011 | 0.003 | 0.015 | |
Cytometry8 | 0.016 | 0.000 | 0.016 | |
Cytometry9 | 0.026 | 0.001 | 0.027 | |
buildDatabase | 0.522 | 0.040 | 0.562 | |
cytometry.diagnosis | 0.002 | 0.000 | 0.001 | |
noise.types | 0.001 | 0.000 | 0.001 | |