J. Spidlen
| Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/gatingMLData |
| git_branch: RELEASE_3_16 |
| git_last_commit: e5b2029 |
| git_last_commit_date: 2022-11-01 10:39:11 -0400 (Tue, 01 Nov 2022) |
| Back to Build/check report for BioC 3.16 experimental data |
|
This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the gatingMLData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 139/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
J. Spidlen
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | |||||||
| Package: gatingMLData |
| Version: 2.38.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:gatingMLData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings gatingMLData_2.38.0.tar.gz |
| StartedAt: 2023-04-11 11:48:31 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 11:48:43 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 11.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: gatingMLData.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:gatingMLData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings gatingMLData_2.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/gatingMLData.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘gatingMLData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gatingMLData’ version ‘2.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gatingMLData’ can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'gatingMLData' is deprecated and will be removed from
See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/gatingMLData.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 50.9Mb
sub-directories of 1Mb or more:
extdata 50.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.16-data-experiment/meat/gatingMLData.Rcheck/00check.log’
for details.
gatingMLData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL gatingMLData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘gatingMLData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning: Package 'gatingMLData' is deprecated and will be removed from Bioconductor version 3.17 ** testing if installed package can be loaded from final location Warning: Package 'gatingMLData' is deprecated and will be removed from Bioconductor version 3.17 ** testing if installed package keeps a record of temporary installation path * DONE (gatingMLData)