Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:26 -0400 (Tue, 11 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ewceData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 116/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
ewceData 1.6.0 (landing page) Alan Murphy
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: ewceData |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings ewceData_1.6.0.tar.gz |
StartedAt: 2023-04-11 11:44:18 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 11:46:46 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 148.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ewceData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings ewceData_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/ewceData.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘ewceData/DESCRIPTION’ ... OK * this is package ‘ewceData’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ewceData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘ewceData.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
ewceData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL ewceData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘ewceData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ewceData)
ewceData.Rcheck/ewceData-Ex.timings
name | user | system | elapsed | |
all_hgnc | 2.560 | 0.394 | 3.364 | |
all_hgnc_wtEnsembl | 0.760 | 0.063 | 0.909 | |
all_mgi | 0.717 | 0.068 | 0.871 | |
all_mgi_wtEnsembl | 0.808 | 0.032 | 0.924 | |
alzh_gwas_top100 | 0.000 | 0.000 | 0.001 | |
cortex_mrna | 2.546 | 0.380 | 3.015 | |
ctd | 2.950 | 0.136 | 3.184 | |
ensembl_transcript_lengths_GCcontent | 0.866 | 0.132 | 1.082 | |
ewceData-Package | 0.696 | 0.048 | 0.859 | |
example_genelist | 0.690 | 0.072 | 0.883 | |
hpsd_genes | 0.971 | 0.172 | 1.243 | |
hypothalamus_mrna | 0.916 | 0.060 | 1.114 | |
id_genes | 0.662 | 0.048 | 0.800 | |
mgi_synonym_data | 0.937 | 0.068 | 1.091 | |
mouse_to_human_homologs | 0.707 | 0.028 | 0.821 | |
rbfox_genes | 0.728 | 0.076 | 0.889 | |
schiz_genes | 0.707 | 0.043 | 0.837 | |
tt_alzh | 0.925 | 0.135 | 1.145 | |
tt_alzh_BA36 | 0.749 | 0.045 | 0.877 | |
tt_alzh_BA44 | 0.748 | 0.032 | 0.866 | |