Back to Build/check report for BioC 3.16 experimental data
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-04-11 14:50:26 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for diggitdata on nebbiolo2


To the developers/maintainers of the diggitdata package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 94/416HostnameOS / ArchINSTALLBUILDCHECK
diggitdata 1.30.0  (landing page)
Mariano Javier Alvarez
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/diggitdata
git_branch: RELEASE_3_16
git_last_commit: 02fcbe6
git_last_commit_date: 2022-11-01 11:04:23 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: diggitdata
Version: 1.30.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:diggitdata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings diggitdata_1.30.0.tar.gz
StartedAt: 2023-04-11 11:40:26 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 11:41:13 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 47.0 seconds
RetCode: 0
Status:   OK  
CheckDir: diggitdata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:diggitdata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings diggitdata_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/diggitdata.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘diggitdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘diggitdata’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘diggitdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 47.3Mb
  sub-directories of 1Mb or more:
    data  47.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘diggitdata.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/diggitdata.Rcheck/00check.log’
for details.



Installation output

diggitdata.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL diggitdata
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘diggitdata’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diggitdata)

Tests output


Example timings

diggitdata.Rcheck/diggitdata-Ex.timings

nameusersystemelapsed
gbm.aracne0.2280.0040.231
gbm.cnv0.1710.0160.187
gbm.cnv.normal0.0420.0000.041
gbm.expression0.9590.0160.975
gbm.mindy0.0020.0000.002